Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 140 7e-28
seq3755 134 3e-26
>seq3721
Length=43933
Score = 140 bits (154), Expect = 7e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||| || || |||||||||||||| ||||| |||| ||||| | ||||| ||
Sbjct 40788 AACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTC 40729
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||||||| || |||||||| ||||| ||||| || || || || || || |||||
Sbjct 40728 GAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTG 40669
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||||| ||| || || || |||||||| || || || || | || | |||||
Sbjct 40668 GATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCTT 40609
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || | || || ||||| | ||||||
Sbjct 40608 TCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Score = 138 bits (152), Expect = 3e-27
Identities = 147/194 (76%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||||||||| || || ||||| || ||||| |||| || |||| || |||||||| ||
Sbjct 40554 GTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCGAGTTG 40495
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||||| ||||| || || ||||| ||||| ||||||||||| || || ||||| || ||
Sbjct 40494 TTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGGATCTT 40435
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || ||||| || ||| ||| || ||||| || | ||||| || ||
Sbjct 40434 AGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTGCCGGT 40375
Query 195117 CAAAGTTTTTACGA 195130
| ||| || ||||
Sbjct 40374 GAGAGTCTTGACGA 40361
Score = 105 bits (116), Expect = 1e-17
Identities = 115/150 (77%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990
|| || || ||||| ||||| ||||| || ||||| ||| |||| || | || |||||
Sbjct 40274 ACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAG-GTACGACCGTCTTC 40216
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| ||||||||||| | || |||||||| || ||||| || || || || ||
Sbjct 40215 AAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTG 40156
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
|| || ||||||||| || ||||||||
Sbjct 40155 GATCTTGCTCTTGACGTTGTCGATGGTGTC 40126
>seq3755
Length=35748
Score = 134 bits (148), Expect = 3e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||||||||||||||| ||||| || ||||| |||| ||| || | ||||||||||| ||
Sbjct 18312 GTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 18371
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | |||||||| || || ||||| || || ||||| || || ||
Sbjct 18372 CTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTGGATCTT 18431
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || ||||| || || ||| || || ||||| | || || || ||
Sbjct 18432 GGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGT 18491
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | |||||
Sbjct 18492 GAGGGTCTTGACGAAGATCTGCAT 18515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109426515972125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |