Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq68 179 4e-40 seq485 100 3e-16 >seq68 Length=8748 Score = 179 bits (198), Expect = 4e-40 Identities = 302/437 (69%), Gaps = 0/437 (0%) Strand=Plus/Plus Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 || |||||||| || || |||| | | |||||||| ||||| || |||||||||| || | Sbjct 3534 TCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACATCAGTGTC 3593 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245 || || | | |||| || | ||||||| | ||| || ||||| | ||| || Sbjct 3594 CAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCGTAGAAG 3653 Query 48246 AAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATT 48305 | ||| | | | | |||||| || || ||| || || || ||||| || | Sbjct 3654 AGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAA 3713 Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 | || || ||||| || || | || ||||| | | |||| || || || || || || Sbjct 3714 ACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGCTTGTTTCCACCC 3773 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 || || | |||||| ||||||||||| |||||| || ||| || ||||||||||| || Sbjct 3774 TGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACAATACCATTGGAG 3833 Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCT 48485 |||||||||| || | ||| || ||| |||| | || | ||| | ||| Sbjct 3834 TTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCG 3893 Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCT 48545 || ||||| || |||| || || | ||||||| || |||||||| ||||| || || Sbjct 3894 ATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTGAGGGTATCGTAAATACCATCG 3953 Query 48546 ATACTATCATCTATCAT 48562 |||||||| || |||| Sbjct 3954 ATACTATCCTCCTTCAT 3970 >seq485 Length=41282 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| || || || | ||||| ||||| || | ||| || | |||||| ||||| || Sbjct 7118 TCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCG 7059 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 ||||||||| ||||| || ||||| || || |||||||||||||| | || | | Sbjct 7058 AATGATCCACTGAAGAAAATTCCTTCAACAGCAGCAAAAGCAACTAGGCGTTGAGCGAAG 6999 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 ||| | || | ||||||||| | | ||||| ||||||||||| || Sbjct 6998 GTAGAGTTTTTGTCTTGAATCCATCTGACAGCCCAGTCAGCCTTCTTCTT 6949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562081572855000