Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq68 179 4e-40
seq485 100 3e-16
>seq68
Length=8748
Score = 179 bits (198), Expect = 4e-40
Identities = 302/437 (69%), Gaps = 0/437 (0%)
Strand=Plus/Plus
Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185
|| |||||||| || || |||| | | |||||||| ||||| || |||||||||| || |
Sbjct 3534 TCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACATCAGTGTC 3593
Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245
|| || | | |||| || | ||||||| | ||| || ||||| | ||| ||
Sbjct 3594 CAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCGTAGAAG 3653
Query 48246 AAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATT 48305
| ||| | | | | |||||| || || ||| || || || ||||| || |
Sbjct 3654 AGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAA 3713
Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365
| || || ||||| || || | || ||||| | | |||| || || || || || ||
Sbjct 3714 ACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGCTTGTTTCCACCC 3773
Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425
|| || | |||||| ||||||||||| |||||| || ||| || ||||||||||| ||
Sbjct 3774 TGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACAATACCATTGGAG 3833
Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCT 48485
|||||||||| || | ||| || ||| |||| | || | ||| | |||
Sbjct 3834 TTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCG 3893
Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCT 48545
|| ||||| || |||| || || | ||||||| || |||||||| ||||| || ||
Sbjct 3894 ATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTGAGGGTATCGTAAATACCATCG 3953
Query 48546 ATACTATCATCTATCAT 48562
|||||||| || ||||
Sbjct 3954 ATACTATCCTCCTTCAT 3970
>seq485
Length=41282
Score = 100 bits (110), Expect = 3e-16
Identities = 124/170 (73%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062
||||| || || || | ||||| ||||| || | ||| || | |||||| ||||| ||
Sbjct 7118 TCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCG 7059
Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122
||||||||| ||||| || ||||| || || |||||||||||||| | || | |
Sbjct 7058 AATGATCCACTGAAGAAAATTCCTTCAACAGCAGCAAAAGCAACTAGGCGTTGAGCGAAG 6999
Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172
||| | || | ||||||||| | | ||||| ||||||||||| ||
Sbjct 6998 GTAGAGTTTTTGTCTTGAATCCATCTGACAGCCCAGTCAGCCTTCTTCTT 6949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562081572855000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |