Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1915 145 6e-29
seq3536 95.1 1e-13
seq3366 87.8 1e-11
>seq1915
Length=29644
Score = 145 bits (160), Expect = 6e-29
Identities = 356/536 (66%), Gaps = 4/536 (1%)
Strand=Plus/Minus
Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053
||| ||||| ||||| || ||||| || ||||| ||| | | | ||| | | |
Sbjct 25169 TATCGGTATTGATTTGGGTACCACCTACTCCTGTGTGGGTATCTTCCGTGATGACAGAAT 25110
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
|||||||| ||||| || ||||| ||| |||| ||||| || | ||| | ||||| ||
Sbjct 25109 CGAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCCTTCACAGA 25050
Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173
|| || | | | | || ||||| ||||| | |||| | | || || || || ||
Sbjct 25049 CACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCACAAACAC 24990
Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233
| || |||||||| ||| | || || | | || || | |||||||| ||
Sbjct 24989 AGTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACGCAGAGGTTCAGGCGGA 24930
Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTA 550292
|||||||| | || ||| | | | | | | ||||| || || |||| | |
Sbjct 24929 CATGAAGCACTTCCCATTCAAGGTCATCGACCGTGCCGGAAAGCCAGTCATCGAAGTCGA 24870
Query 550293 CT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351
| || |||| | ||| ||||| |||||||| |||||||||||||||| || |
Sbjct 24869 GTTCA--AAGGCGAGGCTAAGCAATTCACACCAGAAGAAATTTCATCTATGGTCTTGGTC 24812
Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411
|| |||| | || || |||| ||||| | || | | || || | |||
Sbjct 24811 AAGATGAGGGAGACTGCTGAGGCTTACCTTGGTGGAACTGTCAACAACGCTGTCGTCACT 24752
Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471
|| ||||| || || | ||| || ||| | |||||||| |||||||| || | || |||
Sbjct 24751 GTCCCAGCTTACTTCACTGATTCGCAAAGACAAGCTACGAAAGATGCAGGCCTGATCGCT 24692
Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|| || || ||||| ||||| ||||| || ||||| || || || |||| || ||
Sbjct 24691 GGTCTCAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCAGCTATTGCTTACGG 24636
Score = 96.9 bits (106), Expect = 3e-14
Identities = 249/377 (66%), Gaps = 3/377 (1%)
Strand=Plus/Minus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
|| || |||||||||||||| || ||||| || | || || ||||| || ||||| |
Sbjct 23700 AACCCCGATGAGGCTGTTGCATACGGTGCTGCTGTCCAGGCTGCTATCCTCTCTGGTGAC 23641
Query 552270 AC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326
|| | || || | || || | ||| | ||| | || || | || | ||||| |||
Sbjct 23640 ACCTCATCCAAGTCCACCAACGAAATTCTTCTTCTCGACGTCGCGCCATTGTCTCTGGGT 23581
Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386
| || || | ||| || ||||| || ||||| | | || || || || ||
Sbjct 23580 ATCGAGACTGCTGGTGGACAAATGACCAAGCTTATTCACCGCAACACCACCATCCCAACC 23521
Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446
|| || || || || ||||| | || || || ||| ||| ||| ||||| |
Sbjct 23520 AAGAAGTCAGAAGTCTTCTCTACCTTCTCCGACAACCAACCTGGTGTGCTTATTCAGGTG 23461
Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506
||||| || || |||| ||||| || || |||| || || | || | |
Sbjct 23460 TTTGAGGGTGAGAGAACTCGTACTAAGGACAACAATCTTCTCGGAAAGTTCGAGCTTACC 23401
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|| || || ||||||||||| || || || |||||||| || || ||||| || ||||||
Sbjct 23400 GGCATCCCACCTGCTCCTCGCGGTGTCCCACAAATTGAGGTCACCTTCGACATTGATGCC 23341
Query 552567 AATGGAATTTTGAATGT 552583
|| || || |||| ||
Sbjct 23340 AACGGTATCATGAACGT 23324
>seq3536
Length=11727
Score = 95.1 bits (104), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | ||||| || ||||| || || ||||||||||||||||| || |||||||
Sbjct 7395 ATGCTGTTGTTACTGTTCCGGCATACTTCAACGACTCACAACGTCAAGCAACGAAAGATG 7454
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| || | || ||||| | || ||||| | | |||| ||||| |||||||| ||||
Sbjct 7455 CAGGTCAAATCGCTGGTTTGAACGTTCTCAGAGTAGTCAACGAACCAACTGCTGCCGCAC 7514
Query 550518 TTGCATATGGACTTGATAAA 550537
| || || || || || |||
Sbjct 7515 TCGCCTACGGCCTCGAGAAA 7534
>seq3366
Length=31922
Score = 87.8 bits (96), Expect = 1e-11
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045
||| ||| || ||||| ||| | ||||||||||| ||| || ||||| ||||||
Sbjct 29256 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 29315
Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105
|| |||||||| ||| | | || || ||||| || | | |||||| || ||||| |
Sbjct 29316 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 29375
Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143
||||| || |||| ||| || || |||||||| ||
Sbjct 29376 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 29413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029091072523750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |