Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1915 145 6e-29 seq3536 95.1 1e-13 seq3366 87.8 1e-11 >seq1915 Length=29644 Score = 145 bits (160), Expect = 6e-29 Identities = 356/536 (66%), Gaps = 4/536 (1%) Strand=Plus/Minus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || ||||| || ||||| ||| | | | ||| | | | Sbjct 25169 TATCGGTATTGATTTGGGTACCACCTACTCCTGTGTGGGTATCTTCCGTGATGACAGAAT 25110 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||||| ||||| || ||||| ||| |||| ||||| || | ||| | ||||| || Sbjct 25109 CGAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCCTTCACAGA 25050 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || || | | | | || ||||| ||||| | |||| | | || || || || || Sbjct 25049 CACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCACAAACAC 24990 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 | || |||||||| ||| | || || | | || || | |||||||| || Sbjct 24989 AGTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACGCAGAGGTTCAGGCGGA 24930 Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTA 550292 |||||||| | || ||| | | | | | | ||||| || || |||| | | Sbjct 24929 CATGAAGCACTTCCCATTCAAGGTCATCGACCGTGCCGGAAAGCCAGTCATCGAAGTCGA 24870 Query 550293 CT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | || |||| | ||| ||||| |||||||| |||||||||||||||| || | Sbjct 24869 GTTCA--AAGGCGAGGCTAAGCAATTCACACCAGAAGAAATTTCATCTATGGTCTTGGTC 24812 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||| | || || |||| ||||| | || | | || || | ||| Sbjct 24811 AAGATGAGGGAGACTGCTGAGGCTTACCTTGGTGGAACTGTCAACAACGCTGTCGTCACT 24752 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || ||||| || || | ||| || ||| | |||||||| |||||||| || | || ||| Sbjct 24751 GTCCCAGCTTACTTCACTGATTCGCAAAGACAAGCTACGAAAGATGCAGGCCTGATCGCT 24692 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || ||||| ||||| ||||| || ||||| || || || |||| || || Sbjct 24691 GGTCTCAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCAGCTATTGCTTACGG 24636 Score = 96.9 bits (106), Expect = 3e-14 Identities = 249/377 (66%), Gaps = 3/377 (1%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || |||||||||||||| || ||||| || | || || ||||| || ||||| | Sbjct 23700 AACCCCGATGAGGCTGTTGCATACGGTGCTGCTGTCCAGGCTGCTATCCTCTCTGGTGAC 23641 Query 552270 AC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 || | || || | || || | ||| | ||| | || || | || | ||||| ||| Sbjct 23640 ACCTCATCCAAGTCCACCAACGAAATTCTTCTTCTCGACGTCGCGCCATTGTCTCTGGGT 23581 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| || ||||| || ||||| | | || || || || || Sbjct 23580 ATCGAGACTGCTGGTGGACAAATGACCAAGCTTATTCACCGCAACACCACCATCCCAACC 23521 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || || || || ||||| | || || || ||| ||| ||| ||||| | Sbjct 23520 AAGAAGTCAGAAGTCTTCTCTACCTTCTCCGACAACCAACCTGGTGTGCTTATTCAGGTG 23461 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 ||||| || || |||| ||||| || || |||| || || | || | | Sbjct 23460 TTTGAGGGTGAGAGAACTCGTACTAAGGACAACAATCTTCTCGGAAAGTTCGAGCTTACC 23401 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || || ||||||||||| || || || |||||||| || || ||||| || |||||| Sbjct 23400 GGCATCCCACCTGCTCCTCGCGGTGTCCCACAAATTGAGGTCACCTTCGACATTGATGCC 23341 Query 552567 AATGGAATTTTGAATGT 552583 || || || |||| || Sbjct 23340 AACGGTATCATGAACGT 23324 >seq3536 Length=11727 Score = 95.1 bits (104), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || ||||| || || ||||||||||||||||| || ||||||| Sbjct 7395 ATGCTGTTGTTACTGTTCCGGCATACTTCAACGACTCACAACGTCAAGCAACGAAAGATG 7454 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || | || ||||| | || ||||| | | |||| ||||| |||||||| |||| Sbjct 7455 CAGGTCAAATCGCTGGTTTGAACGTTCTCAGAGTAGTCAACGAACCAACTGCTGCCGCAC 7514 Query 550518 TTGCATATGGACTTGATAAA 550537 | || || || || || ||| Sbjct 7515 TCGCCTACGGCCTCGAGAAA 7534 >seq3366 Length=31922 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045 ||| ||| || ||||| ||| | ||||||||||| ||| || ||||| |||||| Sbjct 29256 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 29315 Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || |||||||| ||| | | || || ||||| || | | |||||| || ||||| | Sbjct 29316 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 29375 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 ||||| || |||| ||| || || |||||||| || Sbjct 29376 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 29413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029091072523750