Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq485 141 2e-28
seq68 98.7 2e-15
>seq485
Length=41282
Score = 141 bits (156), Expect = 2e-28
Identities = 348/521 (67%), Gaps = 19/521 (4%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| || ||||| ||||| |||||||||||||| || | | |||||||||||
Sbjct 7449 CTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTC 7390
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957
||||||| ||||||||||| | || |||||| |||| ||| | | || |
Sbjct 7389 CATGAAGTCGAAGGGGTTGGCAGATTTGTACACCT-TGTCGTTACCAAGAGCAACGAGGA 7331
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| | || |||||| |||||||||||| ||| | | | ||||||||| | || |
Sbjct 7330 GACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGTTCATGCCAAGAAGCG 7271
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
|| | ||||| || | ||||| | || |||| || || || | | |
Sbjct 7270 CGCATGGAAGAGCCTCAGTCAAGAACTCTTGTTCAATCTCAACAGCCTCGGTGATGACAT 7211
Query 48078 GCTTAACGCGGGACTCTGAGGGTTTG-TTGCGCAGGTGCTT------GGCATAGAGCATG 48130
||| |||| | | ||| ||| || ||||||| || | || | |
Sbjct 7210 -CTT------GGACA--GCCTGCTTGCTTGGGC-GGTGCTTCAAGTGGGAGAAAAGGAGG 7161
Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190
|| || ||||| |||| | |||||||| ||| ||||||| | |||||||| ||||
Sbjct 7160 CATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAAAGTGAGA 7101
Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250
|||| ||| | || | | ||||||||||| || | ||||| || ||| ||||||
Sbjct 7100 CCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACTGAAGAAA 7041
Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310
|| || || || || || || || || | | |||| | || ||| ||||||
Sbjct 7040 ATTCCTTCAACAGCAGCAAAAGCAACTAGGCGTTGAGCGAAGGTAGAGTTTTTGTCTTGA 6981
Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||||| | |||||||| ||||||||||| ||||| ||
Sbjct 6980 ATCCATCTGACAGCCCAGTCAGCCTTCTTCTTAATGCAAGG 6940
>seq68
Length=8748
Score = 98.7 bits (108), Expect = 2e-15
Identities = 231/348 (66%), Gaps = 3/348 (1%)
Strand=Plus/Plus
Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838
||||||||| || ||||||| |||| | | ||| | || ||| || || ||||| |
Sbjct 3578 GGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAAT 3637
Query 213839 CCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAG 213898
||||| ||| ||| || || | || | || ||| || ||| || || ||
Sbjct 3638 CCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAG 3697
Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958
|| ||||| || || | ||| |||||||| ||||| | |||||| ||||| || || ||
Sbjct 3698 GTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGG 3757
Query 213959 CCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGG 214015
| |||| || |||||||| || || || ||||||| | || || | ||
Sbjct 3758 ACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGG 3817
Query 214016 TACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTT 214075
|| | || ||||| | || ||||| || || || || | || | || | | |
Sbjct 3818 CACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCT 3877
Query 214076 GCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123
| ||| ||| || ||||||||||||| ||||| ||||| || ||
Sbjct 3878 GTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA 3925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931487678880000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |