Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq485 141 2e-28 seq68 98.7 2e-15 >seq485 Length=41282 Score = 141 bits (156), Expect = 2e-28 Identities = 348/521 (67%), Gaps = 19/521 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || ||||| ||||| |||||||||||||| || | | ||||||||||| Sbjct 7449 CTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTC 7390 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||||||| ||||||||||| | || |||||| |||| ||| | | || | Sbjct 7389 CATGAAGTCGAAGGGGTTGGCAGATTTGTACACCT-TGTCGTTACCAAGAGCAACGAGGA 7331 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || |||||| |||||||||||| ||| | | | ||||||||| | || | Sbjct 7330 GACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGTTCATGCCAAGAAGCG 7271 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 || | ||||| || | ||||| | || |||| || || || | | | Sbjct 7270 CGCATGGAAGAGCCTCAGTCAAGAACTCTTGTTCAATCTCAACAGCCTCGGTGATGACAT 7211 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTG-TTGCGCAGGTGCTT------GGCATAGAGCATG 48130 ||| |||| | | ||| ||| || ||||||| || | || | | Sbjct 7210 -CTT------GGACA--GCCTGCTTGCTTGGGC-GGTGCTTCAAGTGGGAGAAAAGGAGG 7161 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || || ||||| |||| | |||||||| ||| ||||||| | |||||||| |||| Sbjct 7160 CATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAAAGTGAGA 7101 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||| ||| | || | | ||||||||||| || | ||||| || ||| |||||| Sbjct 7100 CCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACTGAAGAAA 7041 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || || || || || || || || || | | |||| | || ||| |||||| Sbjct 7040 ATTCCTTCAACAGCAGCAAAAGCAACTAGGCGTTGAGCGAAGGTAGAGTTTTTGTCTTGA 6981 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| | |||||||| ||||||||||| ||||| || Sbjct 6980 ATCCATCTGACAGCCCAGTCAGCCTTCTTCTTAATGCAAGG 6940 >seq68 Length=8748 Score = 98.7 bits (108), Expect = 2e-15 Identities = 231/348 (66%), Gaps = 3/348 (1%) Strand=Plus/Plus Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838 ||||||||| || ||||||| |||| | | ||| | || ||| || || ||||| | Sbjct 3578 GGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAAT 3637 Query 213839 CCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAG 213898 ||||| ||| ||| || || | || | || ||| || ||| || || || Sbjct 3638 CCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAG 3697 Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 || ||||| || || | ||| |||||||| ||||| | |||||| ||||| || || || Sbjct 3698 GTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGG 3757 Query 213959 CCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGG 214015 | |||| || |||||||| || || || ||||||| | || || | || Sbjct 3758 ACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGG 3817 Query 214016 TACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTT 214075 || | || ||||| | || ||||| || || || || | || | || | | | Sbjct 3818 CACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCT 3877 Query 214076 GCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 | ||| ||| || ||||||||||||| ||||| ||||| || || Sbjct 3878 GTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA 3925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931487678880000