Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq68 167 4e-36 seq485 105 1e-17 >seq68 Length=8748 Score = 167 bits (184), Expect = 4e-36 Identities = 363/534 (68%), Gaps = 12/534 (2%) Strand=Plus/Plus Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 |||||||||||| |||||| ||| | || ||| | || ||| ||||| ||||| || Sbjct 3578 GGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAAT 3637 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||||| || | |||||||| | || || || ||| |||| ||| || | || Sbjct 3638 CCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAG 3697 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 |||| |||||| |||| ||| |||||||| ||||| || |||| || | || || || Sbjct 3698 GTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGG 3757 Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTC-CAG-AGCGTTGAAGATGCGAAGGGTC 222235 |||||||| |||||||| | || ||| |||| ||| | |||||| | || || | Sbjct 3758 ACGCTTGTTTCCACCCTGGT-CAACAT-ATCTCGCAGTATTGTTGAAAACTCGTAGCATA 3815 Query 222236 GGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGG 222295 || || | || ||||| ||| ||||| || |||||| ||||| || | || Sbjct 3816 GGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCAC---GG 3872 Query 222296 TTACTGGCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTG 222352 | ||| | || ||||| |||||||||| ||| || ||||| || || ||||| Sbjct 3873 ATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTG 3932 Query 222353 AGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGAC 222412 || || || || || || ||| |||||||| | || | || || || || || Sbjct 3933 AGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAA 3992 Query 222413 ATCTGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471 | |||| || ||||| | || ||| || || || || |||||| || ||||| Sbjct 3993 AGTTGAGCTTGTGGTGTACCA-GCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTT 4051 Query 222472 CCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525 | ||||||| | ||| ||||| | | | || |||| | ||| |||||||| Sbjct 4052 ATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAAT 4105 >seq485 Length=41282 Score = 105 bits (116), Expect = 1e-17 Identities = 332/512 (65%), Gaps = 11/512 (2%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTT 25872 |||| |||| |||||| ||||| | | ||||| ||| | | | | | |||| || Sbjct 6944 GCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGA-CAAAAACTCTACCTTC 7002 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 | | || || || || ||||||||||| || || || || ||||| || || || || Sbjct 7003 GCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATTCGCC 7062 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 | ||||||||||||||| | || ||| | || || ||||| ||||| ||||| Sbjct 7063 TCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCT-CACTTTCTCCAATGAGCT 7121 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051 |||| | | ||||| ||||| |||| || || || ||||| || | | | |||||| Sbjct 7122 CATCTCCCGTGACGAAGGTCTTCACACCGACTTCGCATGCCTCCTTTTCTC---CCACTT 7178 Query 26052 GCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110 | ||| || |||| || | ||| | | |||||| |||||||| ||||| | Sbjct 7179 GAAGCAC-CGCCCAAGCAAGCAGGCTGTCCAAGATGTCATCACCGAGGCTGTTGAGATTG 7237 Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170 | | ||||| | ||||||||| | | | Sbjct 7238 AACAAGAGTTCTTGACTGAGGCTCTTCCATGCGCGCTTCTTGGCATGAACTCGAACTTGA 7297 Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA 26229 ||| |||||||| |||| || || |||| ||| || || | || || || || Sbjct 7298 TGAAGCAATACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGC-TCTTGGTAACGACAAG 7356 Query 26230 CTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 | |||| | | ||||| |||||||| ||||| ||||| || | | ||| ||||| Sbjct 7357 GTGTACAAATCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACA 7416 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || ||||| ||||| ||||| || Sbjct 7417 AACTTCTTCGAGAAGAGAGTCGGTGACTACCA 7448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928799809080000