Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq68 167 4e-36
seq485 105 1e-17
>seq68
Length=8748
Score = 167 bits (184), Expect = 4e-36
Identities = 363/534 (68%), Gaps = 12/534 (2%)
Strand=Plus/Plus
Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057
|||||||||||| |||||| ||| | || ||| | || ||| ||||| ||||| ||
Sbjct 3578 GGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAAT 3637
Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117
||||| || | |||||||| | || || || ||| |||| ||| || | ||
Sbjct 3638 CCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAG 3697
Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177
|||| |||||| |||| ||| |||||||| ||||| || |||| || | || || ||
Sbjct 3698 GTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGG 3757
Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTC-CAG-AGCGTTGAAGATGCGAAGGGTC 222235
|||||||| |||||||| | || ||| |||| ||| | |||||| | || || |
Sbjct 3758 ACGCTTGTTTCCACCCTGGT-CAACAT-ATCTCGCAGTATTGTTGAAAACTCGTAGCATA 3815
Query 222236 GGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGG 222295
|| || | || ||||| ||| ||||| || |||||| ||||| || | ||
Sbjct 3816 GGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCAC---GG 3872
Query 222296 TTACTGGCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTG 222352
| ||| | || ||||| |||||||||| ||| || ||||| || || |||||
Sbjct 3873 ATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTG 3932
Query 222353 AGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGAC 222412
|| || || || || || ||| |||||||| | || | || || || || ||
Sbjct 3933 AGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAA 3992
Query 222413 ATCTGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471
| |||| || ||||| | || ||| || || || || |||||| || |||||
Sbjct 3993 AGTTGAGCTTGTGGTGTACCA-GCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTT 4051
Query 222472 CCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525
| ||||||| | ||| ||||| | | | || |||| | ||| ||||||||
Sbjct 4052 ATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAAT 4105
>seq485
Length=41282
Score = 105 bits (116), Expect = 1e-17
Identities = 332/512 (65%), Gaps = 11/512 (2%)
Strand=Plus/Plus
Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTT 25872
|||| |||| |||||| ||||| | | ||||| ||| | | | | | |||| ||
Sbjct 6944 GCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGA-CAAAAACTCTACCTTC 7002
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
| | || || || || ||||||||||| || || || || ||||| || || || ||
Sbjct 7003 GCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATTCGCC 7062
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991
| ||||||||||||||| | || ||| | || || ||||| ||||| |||||
Sbjct 7063 TCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCT-CACTTTCTCCAATGAGCT 7121
Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051
|||| | | ||||| ||||| |||| || || || ||||| || | | | ||||||
Sbjct 7122 CATCTCCCGTGACGAAGGTCTTCACACCGACTTCGCATGCCTCCTTTTCTC---CCACTT 7178
Query 26052 GCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110
| ||| || |||| || | ||| | | |||||| |||||||| ||||| |
Sbjct 7179 GAAGCAC-CGCCCAAGCAAGCAGGCTGTCCAAGATGTCATCACCGAGGCTGTTGAGATTG 7237
Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170
| | ||||| | ||||||||| | | |
Sbjct 7238 AACAAGAGTTCTTGACTGAGGCTCTTCCATGCGCGCTTCTTGGCATGAACTCGAACTTGA 7297
Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA 26229
||| |||||||| |||| || || |||| ||| || || | || || || ||
Sbjct 7298 TGAAGCAATACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGC-TCTTGGTAACGACAAG 7356
Query 26230 CTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289
| |||| | | ||||| |||||||| ||||| ||||| || | | ||| |||||
Sbjct 7357 GTGTACAAATCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACA 7416
Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||||| || ||||| ||||| ||||| ||
Sbjct 7417 AACTTCTTCGAGAAGAGAGTCGGTGACTACCA 7448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928799809080000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |