Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 114 8e-20
seq1915 107 1e-17
seq3721 98.7 6e-15
seq542 98.7 6e-15
seq3536 89.7 3e-12
>seq3755
Length=35748
Score = 114 bits (126), Expect = 8e-20
Identities = 117/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| || || || || | ||||||||||||||| |||||||| |||||
Sbjct 18360 ATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTT 18419
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| || ||||| |||||| || || ||||||| | | | || ||||| ||
Sbjct 18420 GTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 18479
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||||||| ||||| ||||| ||||| || ||
Sbjct 18480 GGTTTTACCCGTGAGGGTCTTGACGAAGATCTG 18512
>seq1915
Length=29644
Score = 107 bits (118), Expect = 1e-17
Identities = 247/369 (67%), Gaps = 5/369 (1%)
Strand=Plus/Minus
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCA- 475851
|| || ||||| ||||||||||| || ||||||||||| || ||||| | || ||| |
Sbjct 23700 AACCCCGATGAGGCTGTTGCATACGGTGCTGCTGTCCAGGCTGCTATCCTCTCTGGTGAC 23641
Query 475852 --ATCAGACGAG-AAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGG 475908
||| | || || || || ||| | ||| | ||||| | ||| | || | ||
Sbjct 23640 ACCTCATCCAAGTCCACCAACGAA-ATTCTTCTTCTCGACGTCGCGCCATTGTCTCTGGG 23582
Query 475909 TCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATG 475968
| | || || | ||| || ||||| || |||||| || | || || | ||||||
Sbjct 23581 TATCGAGACTGCTGGTGGACAAATGACCAAGCTTATTCACCGCAACACCACCATCCCAAC 23522
Query 475969 CAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAAT 476028
||| || ||| |||| || || || | || || || ||| | ||| || || |
Sbjct 23521 CAAGAAGTCAGAAGTCTTCTCTACCTTCTCCGACAACCAACCTGGTGTGCTTATTCAGGT 23462
Query 476029 CTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGA 476088
||||| ||||| |||| ||||| || || || || |||| || | |||
Sbjct 23461 GTTTGAGGGTGAGAGAACTCGTACTAAGGACAACAATCTTCTCGGAAAGTTCGAGCTTAC 23402
Query 476089 AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGC 476148
|| || || |||||||| | || || || |||||||| || || || || ||||||||
Sbjct 23401 CGGCATCCCACCTGCTCCTCGCGGTGTCCCACAAATTGAGGTCACCTTCGACATTGATGC 23342
Query 476149 AAATGGTAT 476157
|| |||||
Sbjct 23341 CAACGGTAT 23333
>seq3721
Length=43933
Score = 98.7 bits (108), Expect = 6e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | ||||| ||| ||| || | || || || | || ||
Sbjct 40572 ACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGT 40513
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | ||||| ||||| || || || ||||| |||||||| || || |||||||| ||
Sbjct 40512 TCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCC 40453
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||| ||||| ||||| |||||| || || ||||| | | |||||
Sbjct 40452 CTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAG 40393
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
|| || || || |||||||||||||| ||||
Sbjct 40392 AGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 40361
Score = 96.9 bits (106), Expect = 2e-14
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || || | || || ||||| || || | |||||||||| || ||
Sbjct 41028 ACGGAGACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGT 40969
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|||| ||| || | ||||||||||| || || | || ||||| || || || || ||
Sbjct 40968 TCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACC 40909
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||||| |||||| ||||| ||||| ||||| | | | | || |||
Sbjct 40908 CTCCTTGTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAA 40849
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || ||||| | |||||| ||||| || ||
Sbjct 40848 -CGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTG 40810
>seq542
Length=29042
Score = 98.7 bits (108), Expect = 6e-15
Identities = 112/148 (76%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| |||||||||||||| || || || | |||||||||||| || |||||||| |||||
Sbjct 10216 ATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCCGGGGGAATTCCCTCCTT 10157
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735
||| || ||||| |||||| ||||| ||||| | | | | |||||||| |
Sbjct 10156 GTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAAGACTCCA-CCTCAAGGGTGA 10098
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAA 480763
|||| || || || || ||||| |||||
Sbjct 10097 TAGTCTTTCCCGTAAGGGTCTTGACGAA 10070
>seq3536
Length=11727
Score = 89.7 bits (98), Expect = 3e-12
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || |||||||||| ||||| || || || || |||||||||||||| |||||||
Sbjct 7395 ATGCTGTTGTTACTGTTCCGGCATACTTCAACGACTCACAACGTCAAGCAACGAAAGATG 7454
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || ||| || ||| | || ||| | | | | || |||||||| || |||||||
Sbjct 7455 CAGGTCAAATCGCTGGTTTGAACGTTCTCAGAGTAGTCAACGAACCAACTGCTGCCGCAC 7514
Query 474855 TTGCTTATGGTCTTGATAA 474873
| || || || || || ||
Sbjct 7515 TCGCCTACGGCCTCGAGAA 7533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268012982448500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |