Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3755 114 8e-20 seq1915 107 1e-17 seq3721 98.7 6e-15 seq542 98.7 6e-15 seq3536 89.7 3e-12 >seq3755 Length=35748 Score = 114 bits (126), Expect = 8e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| || || || || | ||||||||||||||| |||||||| ||||| Sbjct 18360 ATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTT 18419 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| |||||| || || ||||||| | | | || ||||| || Sbjct 18420 GTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 18479 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| ||||| ||||| ||||| || || Sbjct 18480 GGTTTTACCCGTGAGGGTCTTGACGAAGATCTG 18512 >seq1915 Length=29644 Score = 107 bits (118), Expect = 1e-17 Identities = 247/369 (67%), Gaps = 5/369 (1%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCA- 475851 || || ||||| ||||||||||| || ||||||||||| || ||||| | || ||| | Sbjct 23700 AACCCCGATGAGGCTGTTGCATACGGTGCTGCTGTCCAGGCTGCTATCCTCTCTGGTGAC 23641 Query 475852 --ATCAGACGAG-AAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGG 475908 ||| | || || || || ||| | ||| | ||||| | ||| | || | || Sbjct 23640 ACCTCATCCAAGTCCACCAACGAA-ATTCTTCTTCTCGACGTCGCGCCATTGTCTCTGGG 23582 Query 475909 TCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATG 475968 | | || || | ||| || ||||| || |||||| || | || || | |||||| Sbjct 23581 TATCGAGACTGCTGGTGGACAAATGACCAAGCTTATTCACCGCAACACCACCATCCCAAC 23522 Query 475969 CAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAAT 476028 ||| || ||| |||| || || || | || || || ||| | ||| || || | Sbjct 23521 CAAGAAGTCAGAAGTCTTCTCTACCTTCTCCGACAACCAACCTGGTGTGCTTATTCAGGT 23462 Query 476029 CTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGA 476088 ||||| ||||| |||| ||||| || || || || |||| || | ||| Sbjct 23461 GTTTGAGGGTGAGAGAACTCGTACTAAGGACAACAATCTTCTCGGAAAGTTCGAGCTTAC 23402 Query 476089 AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGC 476148 || || || |||||||| | || || || |||||||| || || || || |||||||| Sbjct 23401 CGGCATCCCACCTGCTCCTCGCGGTGTCCCACAAATTGAGGTCACCTTCGACATTGATGC 23342 Query 476149 AAATGGTAT 476157 || ||||| Sbjct 23341 CAACGGTAT 23333 >seq3721 Length=43933 Score = 98.7 bits (108), Expect = 6e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | ||||| ||| ||| || | || || || | || || Sbjct 40572 ACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGT 40513 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||| ||||| || || || ||||| |||||||| || || |||||||| || Sbjct 40512 TCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCC 40453 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||| ||||| ||||| |||||| || || ||||| | | ||||| Sbjct 40452 CTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAG 40393 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 || || || || |||||||||||||| |||| Sbjct 40392 AGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 40361 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | || || ||||| || || | |||||||||| || || Sbjct 41028 ACGGAGACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGT 40969 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| ||| || | ||||||||||| || || | || ||||| || || || || || Sbjct 40968 TCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACC 40909 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| |||||| ||||| ||||| ||||| | | | | || ||| Sbjct 40908 CTCCTTGTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAA 40849 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || ||||| | |||||| ||||| || || Sbjct 40848 -CGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTG 40810 >seq542 Length=29042 Score = 98.7 bits (108), Expect = 6e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| |||||||||||||| || || || | |||||||||||| || |||||||| ||||| Sbjct 10216 ATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCCGGGGGAATTCCCTCCTT 10157 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| |||||| ||||| ||||| | | | | |||||||| | Sbjct 10156 GTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAAGACTCCA-CCTCAAGGGTGA 10098 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAA 480763 |||| || || || || ||||| ||||| Sbjct 10097 TAGTCTTTCCCGTAAGGGTCTTGACGAA 10070 >seq3536 Length=11727 Score = 89.7 bits (98), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || |||||||||| ||||| || || || || |||||||||||||| ||||||| Sbjct 7395 ATGCTGTTGTTACTGTTCCGGCATACTTCAACGACTCACAACGTCAAGCAACGAAAGATG 7454 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||| || ||| | || ||| | | | | || |||||||| || ||||||| Sbjct 7455 CAGGTCAAATCGCTGGTTTGAACGTTCTCAGAGTAGTCAACGAACCAACTGCTGCCGCAC 7514 Query 474855 TTGCTTATGGTCTTGATAA 474873 | || || || || || || Sbjct 7515 TCGCCTACGGCCTCGAGAA 7533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268012982448500