Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq730 113 5e-20 >seq730 Length=11531 Score = 113 bits (124), Expect = 5e-20 Identities = 266/394 (68%), Gaps = 11/394 (3%) Strand=Plus/Plus Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241 |||||| || || || || || || ||||| || ||||| ||||||||||||||||| || Sbjct 7474 TACACCGATTGGTCCAACACCTGGTCCTCCGCCACCATGCGGAATACAGAATGTCTTGTG 7533 Query 138242 TAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 | ||| ||||| || ||||| |||||| |||| ||| | || | || || Sbjct 7534 AAGATTGAGATGGCAAACATCAGCACCAATCTCACCAGGTGAACACAATCCAATTTGAGC 7593 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361 ||| | ||| || || || | || || ||||| || | | |||||| || | ||| | Sbjct 7594 ATTCATATTGGCCCCGTCCATGTAGACTTGACCGCCGTGCTGATGAACAATATCACA-AG 7652 Query 138362 CTGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATG 138420 | | | |||| | || ||| || ||||| || ||||||||| |||||||| | Sbjct 7653 CAGCCTTGATCTCTGGTTCGAACACACCGAATGTGCTTGGATATGTGATCATAATGGCTC 7712 Query 138421 AGAGTTC--AAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCC 138478 || || | |||||| | | ||| | || || ||| ||||| | || || Sbjct 7713 CCAGCTCCTCACTGTATTTCTCA-CACTTGGCTTTCAAG-TCTGCCATGTCGAGATTACC 7770 Query 138479 A----TCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAG 138534 | | || |||||||||||| || ||| ||| ||||||||| | || |||| Sbjct 7771 AGACTTGAT-ATCACACTTGACTGTGACGACTCGCATGCCTGCCATGGCAGCCGATGCAG 7829 Query 138535 GATTAGTTCCATGTGCTGACTCTGGTATCAGACA 138568 |||| || ||||| || || |||| ||||| || Sbjct 7830 GATTGGTACCATGAGCGGAGACTGGAATCAGGCA 7863 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || || || |||||||| | ||| || | ||||| || || | || || | | Sbjct 9244 CATAGCTTCGGCAGCTGCAGTAGATTCGTCGAGGAGAGACGCATTGGAGATCGGAAGCGC 9303 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || | || | || ||| || ||||| || ||||||| ||||| ||||| ||| || Sbjct 9304 CGTCAAGTCAGAGACGAGGGTCTGGTAGTTCAATAAAGACTCCAACCTTCCTTGACTGAT 9363 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||| ||| || || |||||| ||||||||||| ||| ||| || ||||||| || Sbjct 9364 CTCAGGTTGGTATGGTGTGTAACTTGTGTACCAACCAGGGCCCTCCAGCACGTTTCTCTT 9423 Query 140039 TATGAC 140044 ||||| Sbjct 9424 AATGAC 9429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578970354765000