Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq730 113 5e-20
>seq730
Length=11531
Score = 113 bits (124), Expect = 5e-20
Identities = 266/394 (68%), Gaps = 11/394 (3%)
Strand=Plus/Plus
Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241
|||||| || || || || || || ||||| || ||||| ||||||||||||||||| ||
Sbjct 7474 TACACCGATTGGTCCAACACCTGGTCCTCCGCCACCATGCGGAATACAGAATGTCTTGTG 7533
Query 138242 TAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301
| ||| ||||| || ||||| |||||| |||| ||| | || | || ||
Sbjct 7534 AAGATTGAGATGGCAAACATCAGCACCAATCTCACCAGGTGAACACAATCCAATTTGAGC 7593
Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361
||| | ||| || || || | || || ||||| || | | |||||| || | ||| |
Sbjct 7594 ATTCATATTGGCCCCGTCCATGTAGACTTGACCGCCGTGCTGATGAACAATATCACA-AG 7652
Query 138362 CTGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATG 138420
| | | |||| | || ||| || ||||| || ||||||||| |||||||| |
Sbjct 7653 CAGCCTTGATCTCTGGTTCGAACACACCGAATGTGCTTGGATATGTGATCATAATGGCTC 7712
Query 138421 AGAGTTC--AAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCC 138478
|| || | |||||| | | ||| | || || ||| ||||| | || ||
Sbjct 7713 CCAGCTCCTCACTGTATTTCTCA-CACTTGGCTTTCAAG-TCTGCCATGTCGAGATTACC 7770
Query 138479 A----TCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAG 138534
| | || |||||||||||| || ||| ||| ||||||||| | || ||||
Sbjct 7771 AGACTTGAT-ATCACACTTGACTGTGACGACTCGCATGCCTGCCATGGCAGCCGATGCAG 7829
Query 138535 GATTAGTTCCATGTGCTGACTCTGGTATCAGACA 138568
|||| || ||||| || || |||| ||||| ||
Sbjct 7830 GATTGGTACCATGAGCGGAGACTGGAATCAGGCA 7863
Score = 96.9 bits (106), Expect = 4e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918
||| || || || |||||||| | ||| || | ||||| || || | || || | |
Sbjct 9244 CATAGCTTCGGCAGCTGCAGTAGATTCGTCGAGGAGAGACGCATTGGAGATCGGAAGCGC 9303
Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978
|| | || | || ||| || ||||| || ||||||| ||||| ||||| ||| ||
Sbjct 9304 CGTCAAGTCAGAGACGAGGGTCTGGTAGTTCAATAAAGACTCCAACCTTCCTTGACTGAT 9363
Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038
||||| ||| || || |||||| ||||||||||| ||| ||| || ||||||| ||
Sbjct 9364 CTCAGGTTGGTATGGTGTGTAACTTGTGTACCAACCAGGGCCCTCCAGCACGTTTCTCTT 9423
Query 140039 TATGAC 140044
|||||
Sbjct 9424 AATGAC 9429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578970354765000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |