Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq68 219 5e-52 >seq68 Length=8748 Score = 219 bits (242), Expect = 5e-52 Identities = 1169/1841 (63%), Gaps = 41/1841 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| || |||| ||||| ||| || | || |||| || |||||||| | | Sbjct 4204 TACTTCGGATTCAAGACCCTCGAGC-GATCATACCTTCTTCGACTCGATGGAAAGGTTGC 4146 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| | ||| ||||||| || || | || || ||||| || || || || Sbjct 4145 AGAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGA 4086 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323 || | | ||||| ||| || ||||||| | | || |||| ||||| | || | Sbjct 4085 GAGTGCCATTGAGACCTACAACTTGATGTCCAATAAATAC-TTCACCCACGCCTCCCCTA 4027 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | || ||| |||||||||||| | | || | || |||||||| || | || | Sbjct 4026 CACTTTTCTCCGCTGGTACACCACAAGCTCAACTTTCATCATGCTTCCTCATTGACATGA 3967 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 ||||||| ||| | ||||| || | || || | | |||||| || || || Sbjct 3966 AGGAGGATAGTATCGATGGTATTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAA 3907 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503 || || || || || | |||| || | | || | | | ||| | Sbjct 3906 ACGCCGGTGGCATCGGTCTCAACATTCACAGAATCCGTGCTACTGGTGCCTACATTGCCG 3847 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || |||||| | || |||||||| | || ||||| || || || ||| || ||| Sbjct 3846 GTACCAATGGTAACTCCAATGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCGA 3787 Query 75564 GCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGGAAC 75617 | ||||| | || ||| | |||| | || ||| || ||||| | || | Sbjct 3786 GATATGTTGACCA---GGGTGGAAACAAGCGTCCTGGTGCATTTGCAATCTACCTTGAGC 3730 Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGG 75677 | ||||| || || | | ||||| || || | ||| ||||| ||| | ||||| | Sbjct 3729 CTTGGCACGCAGACGTTTTCGAGTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAG 3670 Query 75678 CTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTG 75737 || | |||||||| | | |||||||||| || || || |||||||| || | Sbjct 3669 TCCGCGCCCGTGATCTCTTCTACGCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCG 3610 Query 75738 AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCG 75796 | || || | ||| | || | ||||| || || || | ||| | | || | Sbjct 3609 AAAAGAACGGAGACTGGACACTGATGTGTCCCAACGAATGCCCTGGGT-TGGCTGATGTA 3551 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAAT 75853 || || || || ||||| ||||| | ||||| |||| ||||||| ||| Sbjct 3550 TACGGCGATGAATTCGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAA 3491 Query 75854 GCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 | | | |||| | ||||| | | |||||| | | || || ||||| ||| Sbjct 3490 ACCA---TCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGA 3434 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 | |||| ||||||||||||||||| || || |||||||| ||||||||||| | || Sbjct 3433 AACCCATTCATGCTTTACAAGGATGCATGCAATAAGAAGAGCAACCAAAAGAACCTCGGC 3374 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || || ||||| ||||| ||||| |||||| | || ||| | | ||||| Sbjct 3373 ACCATTCGCAGCTCCAATCTGTGCACAGAAATTGTCGAATACTCTGCACCAGATGAAGTT 3314 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA--TGAA-GAGACTCGC 76090 ||| || || ||||||| || || || |||| | ||| | |||| ||| | Sbjct 3313 GCTTGCTGTAACCTGGCATCCATTGCTCTCCCAACATTTGTGGACATGAACGAGG---GA 3257 Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150 |||| || | |||| ||||| || | || | | ||| || || | ||| Sbjct 3256 ACTTACGACTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGGAACTTGAACAAG 3197 Query 76151 GTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210 ||||||||| || | || ||||| | || ||||| ||| | || ||| | Sbjct 3196 ATCATTGACATCAACTACTACCCCGTCCAAGAAGCCAGAAAGAGCAATTTCCGTCACCGG 3137 Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT--TGTGCCGCTACGCAT 76268 ||||| | | | ||||| |||||||| || |||| ||| || | | | ||| ||| Sbjct 3136 CCTATCGCTGTCGGTGTCCAAGGTCTTGCTGATGC-TTTCTTGGCTCTTCGTTTAC-CAT 3079 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328 |||| ||| |||||| ||| | | || | || ||||| || || || || ||||| Sbjct 3078 TTGAGTCACCTGAAGCTAAGCACCTCAACGTTCAAATCTTCGAGACTATTTACCACGCTG 3019 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388 | || | | | ||| | ||| | | | ||| |||||||||| | || || | Sbjct 3018 CATTGACGTCTTCTGTTGAGATTGCTAAGGAGCTGGGTACCTATGAGACTTACGAAGGCT 2959 Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT-CAAC 76447 | || | || |||| | ||||| | |||||||||| || | | ||| | | | Sbjct 2958 CACCTGTCTCAAAAGGCGAACTTCAATACGATATGTGGGGAG-TCACACCTACCGACCTT 2900 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | ||||||||| | ||| || |||||| | | ||| | || |||||| | | Sbjct 2899 TGGGACTGGGATAGCTTGAAGAAATCCATCAAACAATACGGTGTCCGCAACAGTTTGCTC 2840 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || |||||||||||| ||| | || || | ||| |||||| || || ||| Sbjct 2839 GTTGCCCCTATGCCAACAGCCAGTACCTCTCAGATTCTCGGTTTTAATGAGTGTTTCGAA 2780 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 ||||||||| | ||||||||| | | | | ||||| || || | || ||| Sbjct 2779 CCATACACATCTAACATCTACTCTCGTCGTGTCTTAGCAGGGGAATTCCAAGTCGTTAAC 2720 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687 || |||| || || | || || | ||||| | | |||||| | | | Sbjct 2719 CCATGGCTTCTCAAGGATCTTGTCGACATGGGATTGTGGTCAGACAACATGAAGAACCGC 2660 Query 76688 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAAT 76747 || | | || ||||| || || || ||| | | || |||| ||| |||||| Sbjct 2659 ATCATTGCTGACGGCGGTTCAATCCAGAACATCCCCAACATTCCAGCTGACATCAAGGCA 2600 Query 76748 CTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCGCAGATC 76805 || ||| || |||||||| | || | ||| | | || | |||||||| || | Sbjct 2599 CTTTACAAGACCGTGTGGGAGATTTCCCAACGAACAA--TTGTTCAAATGGCCGCTGACC 2542 Query 76806 GTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCAT-GGAAAG-TCCAACGAT 76863 ||||| ||| ||||||| ||| ||||| |||||| ||||| || || || Sbjct 2541 GTGGTGCTTTCGTTGATCAGTCGCAATCAATGAA--CATTCATATGAAAGACCCCACCAT 2484 Query 76864 GTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTA 76923 | |||| | | || |||||| | || ||||||| || ||||| ||||||||||| Sbjct 2483 GGGCAAGATTACGTCCATGCATTTTGCCGGTTGGAAACTAGGTCTCAAGACCGGAATGTA 2424 Query 76924 CTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 ||| ||||| | | ||| | || ||| ||||| |||| Sbjct 2423 CTACCTCCGTACCATGGCTGCATCCGCACCGATTCAATTCA 2383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596540703660000