Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq68 219 5e-52
>seq68
Length=8748
Score = 219 bits (242), Expect = 5e-52
Identities = 1169/1841 (63%), Gaps = 41/1841 (2%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204
||||| || |||| ||||| ||| || | || |||| || |||||||| | |
Sbjct 4204 TACTTCGGATTCAAGACCCTCGAGC-GATCATACCTTCTTCGACTCGATGGAAAGGTTGC 4146
Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264
||| ||||| | ||| ||||||| || || | || || ||||| || || || ||
Sbjct 4145 AGAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGA 4086
Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323
|| | | ||||| ||| || ||||||| | | || |||| ||||| | || |
Sbjct 4085 GAGTGCCATTGAGACCTACAACTTGATGTCCAATAAATAC-TTCACCCACGCCTCCCCTA 4027
Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383
| || ||| |||||||||||| | | || | || |||||||| || | || |
Sbjct 4026 CACTTTTCTCCGCTGGTACACCACAAGCTCAACTTTCATCATGCTTCCTCATTGACATGA 3967
Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443
||||||| ||| | ||||| || | || || | | |||||| || || ||
Sbjct 3966 AGGAGGATAGTATCGATGGTATTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAA 3907
Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503
|| || || || || | |||| || | | || | | | ||| |
Sbjct 3906 ACGCCGGTGGCATCGGTCTCAACATTCACAGAATCCGTGCTACTGGTGCCTACATTGCCG 3847
Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563
| || |||||| | || |||||||| | || ||||| || || || ||| || |||
Sbjct 3846 GTACCAATGGTAACTCCAATGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCGA 3787
Query 75564 GCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGGAAC 75617
| ||||| | || ||| | |||| | || ||| || ||||| | || |
Sbjct 3786 GATATGTTGACCA---GGGTGGAAACAAGCGTCCTGGTGCATTTGCAATCTACCTTGAGC 3730
Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGG 75677
| ||||| || || | | ||||| || || | ||| ||||| ||| | ||||| |
Sbjct 3729 CTTGGCACGCAGACGTTTTCGAGTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAG 3670
Query 75678 CTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTG 75737
|| | |||||||| | | |||||||||| || || || |||||||| || |
Sbjct 3669 TCCGCGCCCGTGATCTCTTCTACGCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCG 3610
Query 75738 AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCG 75796
| || || | ||| | || | ||||| || || || | ||| | | || |
Sbjct 3609 AAAAGAACGGAGACTGGACACTGATGTGTCCCAACGAATGCCCTGGGT-TGGCTGATGTA 3551
Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAAT 75853
|| || || || ||||| ||||| | ||||| |||| ||||||| |||
Sbjct 3550 TACGGCGATGAATTCGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAA 3491
Query 75854 GCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913
| | | |||| | ||||| | | |||||| | | || || ||||| |||
Sbjct 3490 ACCA---TCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGA 3434
Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973
| |||| ||||||||||||||||| || || |||||||| ||||||||||| | ||
Sbjct 3433 AACCCATTCATGCTTTACAAGGATGCATGCAATAAGAAGAGCAACCAAAAGAACCTCGGC 3374
Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033
|| || ||||| ||||| ||||| |||||| | || ||| | | |||||
Sbjct 3373 ACCATTCGCAGCTCCAATCTGTGCACAGAAATTGTCGAATACTCTGCACCAGATGAAGTT 3314
Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA--TGAA-GAGACTCGC 76090
||| || || ||||||| || || || |||| | ||| | |||| ||| |
Sbjct 3313 GCTTGCTGTAACCTGGCATCCATTGCTCTCCCAACATTTGTGGACATGAACGAGG---GA 3257
Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150
|||| || | |||| ||||| || | || | | ||| || || | |||
Sbjct 3256 ACTTACGACTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGGAACTTGAACAAG 3197
Query 76151 GTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210
||||||||| || | || ||||| | || ||||| ||| | || ||| |
Sbjct 3196 ATCATTGACATCAACTACTACCCCGTCCAAGAAGCCAGAAAGAGCAATTTCCGTCACCGG 3137
Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT--TGTGCCGCTACGCAT 76268
||||| | | | ||||| |||||||| || |||| ||| || | | | ||| |||
Sbjct 3136 CCTATCGCTGTCGGTGTCCAAGGTCTTGCTGATGC-TTTCTTGGCTCTTCGTTTAC-CAT 3079
Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328
|||| ||| |||||| ||| | | || | || ||||| || || || || |||||
Sbjct 3078 TTGAGTCACCTGAAGCTAAGCACCTCAACGTTCAAATCTTCGAGACTATTTACCACGCTG 3019
Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388
| || | | | ||| | ||| | | | ||| |||||||||| | || || |
Sbjct 3018 CATTGACGTCTTCTGTTGAGATTGCTAAGGAGCTGGGTACCTATGAGACTTACGAAGGCT 2959
Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT-CAAC 76447
| || | || |||| | ||||| | |||||||||| || | | ||| | | |
Sbjct 2958 CACCTGTCTCAAAAGGCGAACTTCAATACGATATGTGGGGAG-TCACACCTACCGACCTT 2900
Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507
| ||||||||| | ||| || |||||| | | ||| | || |||||| | |
Sbjct 2899 TGGGACTGGGATAGCTTGAAGAAATCCATCAAACAATACGGTGTCCGCAACAGTTTGCTC 2840
Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567
| || || |||||||||||| ||| | || || | ||| |||||| || || |||
Sbjct 2839 GTTGCCCCTATGCCAACAGCCAGTACCTCTCAGATTCTCGGTTTTAATGAGTGTTTCGAA 2780
Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627
||||||||| | ||||||||| | | | | ||||| || || | || |||
Sbjct 2779 CCATACACATCTAACATCTACTCTCGTCGTGTCTTAGCAGGGGAATTCCAAGTCGTTAAC 2720
Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687
|| |||| || || | || || | ||||| | | |||||| | | |
Sbjct 2719 CCATGGCTTCTCAAGGATCTTGTCGACATGGGATTGTGGTCAGACAACATGAAGAACCGC 2660
Query 76688 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAAT 76747
|| | | || ||||| || || || ||| | | || |||| ||| ||||||
Sbjct 2659 ATCATTGCTGACGGCGGTTCAATCCAGAACATCCCCAACATTCCAGCTGACATCAAGGCA 2600
Query 76748 CTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCGCAGATC 76805
|| ||| || |||||||| | || | ||| | | || | |||||||| || |
Sbjct 2599 CTTTACAAGACCGTGTGGGAGATTTCCCAACGAACAA--TTGTTCAAATGGCCGCTGACC 2542
Query 76806 GTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCAT-GGAAAG-TCCAACGAT 76863
||||| ||| ||||||| ||| ||||| |||||| ||||| || || ||
Sbjct 2541 GTGGTGCTTTCGTTGATCAGTCGCAATCAATGAA--CATTCATATGAAAGACCCCACCAT 2484
Query 76864 GTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTA 76923
| |||| | | || |||||| | || ||||||| || ||||| |||||||||||
Sbjct 2483 GGGCAAGATTACGTCCATGCATTTTGCCGGTTGGAAACTAGGTCTCAAGACCGGAATGTA 2424
Query 76924 CTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964
||| ||||| | | ||| | || ||| ||||| ||||
Sbjct 2423 CTACCTCCGTACCATGGCTGCATCCGCACCGATTCAATTCA 2383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596540703660000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |