Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq542 93.3 8e-14
seq3755 86.0 1e-11
>seq542
Length=29042
Score = 93.3 bits (102), Expect = 8e-14
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
|| || ||||| || | |||| ||| || | ||| |||||||| || || || |
Sbjct 10242 ATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGT 10183
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|||||||| || || ||||| || || || || || |||| || | ||| ||| |||
Sbjct 10182 TGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTA 10123
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAA--TATTT 193356
||||||||||| || || || || ||||| || || || || || || || || |||||
Sbjct 10122 TCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACGAAGCTATTT 10063
Query 193357 GCATTTTATTAGT 193369
|| |||| |||
Sbjct 10062 AAATGTTATCAGT 10050
>seq3755
Length=35748
Score = 86.0 bits (94), Expect = 1e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| || | || | ||| || || || |||||||| | || | |
Sbjct 18301 CGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCA 18360
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||| || ||||| || || || | ||||||||||| || ||||| || ||
Sbjct 18361 TCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTG 18420
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || |||| || | ||| || ||||| || || ||||| || || || ||
Sbjct 18421 TCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATG 18480
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || || || || || || || |||||
Sbjct 18481 GTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899610822990000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |