Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 109 1e-18
seq3755 89.7 1e-12
>seq3721
Length=43933
Score = 109 bits (120), Expect = 1e-18
Identities = 134/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| ||||||||||| | ||||| |||| ||||| || || ||||| ||||| ||||
Sbjct 40989 GATGTTATAATCAGACAGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCG 40930
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
|||||| || ||||| || || || || ||||| || || || || ||| || |
Sbjct 40929 CTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTTTGACTTGACGTTATCAATGGT 40870
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| || ||||| ||||| | |||||||| || || || || || || | || |||||
Sbjct 40869 ATCCGAAGATTCCACTTCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTG 40810
Query 192534 CAT 192536
|||
Sbjct 40809 CAT 40807
>seq3755
Length=35748
Score = 89.7 bits (98), Expect = 1e-12
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| | ||||| | || || || | ||| | ||| || ||| || || || ||
Sbjct 18289 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 18348
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| || ||| |||| || | ||| || || || ||||| || | ||||||||||| ||
Sbjct 18349 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGA 18408
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
||||| || || || || || || || ||||| || | ||| || ||||| ||
Sbjct 18409 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 18468
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||||||||| || | || || | || ||||||||
Sbjct 18469 TCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984431122106250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |