Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 86.0 1e-11
>seq3721
Length=43933
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || | || || || | || | |||||| ||| || || ||
Sbjct 40808 ATACCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCG 40749
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|||| || || | || || | || ||||||||||| || | | || ||||| |||
Sbjct 40748 GATAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGT 40689
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || |||||||| ||||| |||||||| || || |||||||| ||
Sbjct 40688 GGGATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCA 40629
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | || ||||| || || || | || || | ||| || |||||
Sbjct 40628 ACCTCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905092157475000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |