Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq68 201 3e-46
seq485 113 1e-19
seq3845 109 2e-18
seq3023 109 2e-18
seq2997 100 8e-16
>seq68
Length=8748
Score = 201 bits (222), Expect = 3e-46
Identities = 577/879 (66%), Gaps = 15/879 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
|||||| ||||| || |||||| || || || |||||||| | ||||| |||||
Sbjct 3332 GTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 3391
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | || || ||||||||||| || ||| ||||| |||| ||||| | || ||
Sbjct 3392 GCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGC 3451
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| ||||| ||| || | |||| || || ||| ||| ||||||
Sbjct 3452 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTTCCTT 3511
Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
|||||| | ||||| | ||| |||| | || || ||||| |||| || ||||||
Sbjct 3512 CTCATAACTCTCATAGAGAGC-TTCGA-ATTCATCGCCGTATACATCAGCCAACCCAGGG 3569
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAAT 155924
|| | | ||| || | ||| | ||| | || || ||| |||||| ||||||
Sbjct 3570 CATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGA---CACGCTTCATAAAG 3626
Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTG 155983
| ||| ||| | ||| ||||| || || | || |||| || | | |||||
Sbjct 3627 AGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCG-GACTTCTTCCTTACCGTG 3685
Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043
||||| || || || | || || || || | || ||||| || || || ||
Sbjct 3686 GTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGC 3745
Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100
||| |||| | |||| |||||||| || ||||| | ||||| || ||||| ||
Sbjct 3746 AAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAAC 3805
Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160
| ||||||||| | |||||||||||| | |||||||| ||| ||| | | |||||
Sbjct 3806 TCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGT 3865
Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220
| || | | ||||| | || || || ||||| | ||| ||||| ||| ||
Sbjct 3866 AGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA 3925
Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280
||| | |||| | ||||||| || ||| ||| || | ||| | || ||||
Sbjct 3926 CGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCA 3985
Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340
|| | ||||| | ||||||| |||||| ||| |||||||| | || || | ||
Sbjct 3986 TGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAA 4045
Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400
|| ||||| ||||| | | ||| ||||| | |||| | || ||||||||
Sbjct 4046 GTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAAT 4105
Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460
|| | | || | ||| ||| || || ||||| ||| ||| | |||||| | |||
Sbjct 4106 ACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAGTCG 4165
Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|||||||||| || || || || || || ||||| ||
Sbjct 4166 AAGAAGGTATGATCGCTCGAGGGTCTTGAATCCGAAGTA 4204
>seq485
Length=41282
Score = 113 bits (124), Expect = 1e-19
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| ||||| ||||| ||||||||||| | | |||||| || ||||| | |
Sbjct 6938 TTCCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 6997
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|| ||| || || ||||||||||||| || || || ||||| |||||||| | |
Sbjct 6998 CCTTCGCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCAT 7057
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| |||||| || ||||| || || ||||| | | |||| || ||| || || |
Sbjct 7058 TCGCCTCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 7117
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| || || || | ||||| | ||||||||||| || ||
Sbjct 7118 AGCTCATCTCCCGTGACGAAGGTCTTCACACCGACTTCGC 7157
>seq3845
Length=30945
Score = 109 bits (120), Expect = 2e-18
Identities = 197/283 (70%), Gaps = 4/283 (1%)
Strand=Plus/Plus
Query 288937 TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996
|| || || ||||| || || || |||||||| || ||| | ||||| ||| |
Sbjct 8329 TTGAAACCGTCCATCTCAGTCAAGATCTGATTAAGCGTGGCTTCTCGCTCATCGTTTCCA 8388
Query 288997 CCTCTTGAATCACCC-GAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055
|||| |||| | || || | || | ||| ||||||||||||||||||||||||||
Sbjct 8389 CCTCC-GAATGAGCCTGACTTGCCACGAGATTTCCCAACAGCATCAATTTCGTCAATGAA 8447
Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115
|| | ||| |||| | | | || || || || || | || | || | |||||||||
Sbjct 8448 GATGATACATGGAGTACTCTTTCGTGCCATGGCGAAAAGATCACGGACTCTGGATGCTCC 8507
Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATAC-TTGAATGAATGTTACATTTG 289174
|| ||| || ||||||| || ||||| ||| | || |||| ||||| ||| | |
Sbjct 8508 AACACCGACGAACATTTCGACGAATTCCGAACCACTGACGCTGAA-GAATGGTACTTGAG 8566
Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCC 289217
||||| ||| |||| | || | ||||||||||| || ||
Sbjct 8567 ACTCGCCAGCTGTTGCCTTTGCTAATAGTGTCTTACCGGTACC 8609
>seq3023
Length=23922
Score = 109 bits (120), Expect = 2e-18
Identities = 194/281 (69%), Gaps = 4/281 (1%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||| ||||| | | ||||| | |||||| || |||||||||||| | || ||
Sbjct 13656 CATAACATCTTCAAGAGCCTTGACAAGACGACGTTGGATATAACCAGTTTCTGCGGTCTT 13597
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
|| || |||||||| | ||| |||||||| |||| || |||||||| | ||| ||
Sbjct 13596 GACTGCAGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCAGTGGG 13537
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
|| || | || | | || |||| |||||||| | || || || || | |||
Sbjct 13536 GGTAAGACCTCGAAGATATGAATTCTCGACGAAACCTCTCGATTCAGGAGAGTAATCGTC 13477
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
|||||| || || ||||| || |||| | | | ||| | || ||||| || || || ||
Sbjct 13476 CTTGGTGAAATGCGGCAGAGTTCTGTATTTAAAACCGAACGGAATACGTTTACCCTCGAC 13417
Query 302805 GTTCTGCTGTCC--CAGGCACGAAATCATCTGCGAAATATT 302843
||| || || || || || | |||||| ||||||||
Sbjct 13416 AGACTGTTGACCCACAAGCGCGGA--CATCTGGGAAATATT 13378
>seq2997
Length=66137
Score = 100 bits (110), Expect = 8e-16
Identities = 159/223 (71%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 353914 CGACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCC-CGCTGATG 353972
|||||||| | || ||||| ||| ||||| || ||| | ||| || || || ||
Sbjct 60094 CGACCATCTGCGACGTACCATTGTTCTGGGCAAAGAGCACCAACGAACTCTTCGTTG-TG 60152
Query 353973 AGATATAATAATCACACC-CCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCG 354031
||| || |||| ||||| ||| | | | | ||| || || ||| | ||||| |
Sbjct 60153 AGAAATCATAACGACACCTCCCTTGTAATCACG-AATGGCGACAGCAAGACCTCCAAGAG 60211
Query 354032 AGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACA 354091
||||||| || | |||||| |||||||||||||| | | || ||||| | ||||||
Sbjct 60212 AGTCACGATCCAAGAAATTGGTAGGTTCGTCAAGAACCAAAAGATGCGGGTTGTTCCACA 60271
Query 354092 TTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134
| ||| ||||||| || ||||| ||||| ||||| || || ||
Sbjct 60272 TAGCTCCAGCCAGCACAACCTTGACCTTTTGTCCTCCAGAGAG 60314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471744526555875
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |