Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq68 201 3e-46 seq485 113 1e-19 seq3845 109 2e-18 seq3023 109 2e-18 seq2997 100 8e-16 >seq68 Length=8748 Score = 201 bits (222), Expect = 3e-46 Identities = 577/879 (66%), Gaps = 15/879 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| || |||||| || || || |||||||| | ||||| ||||| Sbjct 3332 GTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 3391 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | || || ||||||||||| || ||| ||||| |||| ||||| | || || Sbjct 3392 GCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGC 3451 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | |||| || || ||| ||| |||||| Sbjct 3452 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTTCCTT 3511 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||| | ||||| | ||| |||| | || || ||||| |||| || |||||| Sbjct 3512 CTCATAACTCTCATAGAGAGC-TTCGA-ATTCATCGCCGTATACATCAGCCAACCCAGGG 3569 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAAT 155924 || | | ||| || | ||| | ||| | || || ||| |||||| |||||| Sbjct 3570 CATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGA---CACGCTTCATAAAG 3626 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTG 155983 | ||| ||| | ||| ||||| || || | || |||| || | | ||||| Sbjct 3627 AGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCG-GACTTCTTCCTTACCGTG 3685 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 ||||| || || || | || || || || | || ||||| || || || || Sbjct 3686 GTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGC 3745 Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 ||| |||| | |||| |||||||| || ||||| | ||||| || ||||| || Sbjct 3746 AAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAAC 3805 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 | ||||||||| | |||||||||||| | |||||||| ||| ||| | | ||||| Sbjct 3806 TCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGT 3865 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 | || | | ||||| | || || || ||||| | ||| ||||| ||| || Sbjct 3866 AGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA 3925 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 ||| | |||| | ||||||| || ||| ||| || | ||| | || |||| Sbjct 3926 CGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCA 3985 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 || | ||||| | ||||||| |||||| ||| |||||||| | || || | || Sbjct 3986 TGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAA 4045 Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400 || ||||| ||||| | | ||| ||||| | |||| | || |||||||| Sbjct 4046 GTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAAT 4105 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | | || | ||| ||| || || ||||| ||| ||| | |||||| | ||| Sbjct 4106 ACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAGTCG 4165 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 |||||||||| || || || || || || ||||| || Sbjct 4166 AAGAAGGTATGATCGCTCGAGGGTCTTGAATCCGAAGTA 4204 >seq485 Length=41282 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| ||||| ||||| ||||||||||| | | |||||| || ||||| | | Sbjct 6938 TTCCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 6997 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 || ||| || || ||||||||||||| || || || ||||| |||||||| | | Sbjct 6998 CCTTCGCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCAT 7057 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || |||||| || ||||| || || ||||| | | |||| || ||| || || | Sbjct 7058 TCGCCTCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 7117 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | ||||| | ||||||||||| || || Sbjct 7118 AGCTCATCTCCCGTGACGAAGGTCTTCACACCGACTTCGC 7157 >seq3845 Length=30945 Score = 109 bits (120), Expect = 2e-18 Identities = 197/283 (70%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 288937 TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996 || || || ||||| || || || |||||||| || ||| | ||||| ||| | Sbjct 8329 TTGAAACCGTCCATCTCAGTCAAGATCTGATTAAGCGTGGCTTCTCGCTCATCGTTTCCA 8388 Query 288997 CCTCTTGAATCACCC-GAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 |||| |||| | || || | || | ||| |||||||||||||||||||||||||| Sbjct 8389 CCTCC-GAATGAGCCTGACTTGCCACGAGATTTCCCAACAGCATCAATTTCGTCAATGAA 8447 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 || | ||| |||| | | | || || || || || | || | || | ||||||||| Sbjct 8448 GATGATACATGGAGTACTCTTTCGTGCCATGGCGAAAAGATCACGGACTCTGGATGCTCC 8507 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATAC-TTGAATGAATGTTACATTTG 289174 || ||| || ||||||| || ||||| ||| | || |||| ||||| ||| | | Sbjct 8508 AACACCGACGAACATTTCGACGAATTCCGAACCACTGACGCTGAA-GAATGGTACTTGAG 8566 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCC 289217 ||||| ||| |||| | || | ||||||||||| || || Sbjct 8567 ACTCGCCAGCTGTTGCCTTTGCTAATAGTGTCTTACCGGTACC 8609 >seq3023 Length=23922 Score = 109 bits (120), Expect = 2e-18 Identities = 194/281 (69%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| ||||| | | ||||| | |||||| || |||||||||||| | || || Sbjct 13656 CATAACATCTTCAAGAGCCTTGACAAGACGACGTTGGATATAACCAGTTTCTGCGGTCTT 13597 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| | ||| |||||||| |||| || |||||||| | ||| || Sbjct 13596 GACTGCAGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCAGTGGG 13537 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || || | || | | || |||| |||||||| | || || || || | ||| Sbjct 13536 GGTAAGACCTCGAAGATATGAATTCTCGACGAAACCTCTCGATTCAGGAGAGTAATCGTC 13477 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 |||||| || || ||||| || |||| | | | ||| | || ||||| || || || || Sbjct 13476 CTTGGTGAAATGCGGCAGAGTTCTGTATTTAAAACCGAACGGAATACGTTTACCCTCGAC 13417 Query 302805 GTTCTGCTGTCC--CAGGCACGAAATCATCTGCGAAATATT 302843 ||| || || || || || | |||||| |||||||| Sbjct 13416 AGACTGTTGACCCACAAGCGCGGA--CATCTGGGAAATATT 13378 >seq2997 Length=66137 Score = 100 bits (110), Expect = 8e-16 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 353914 CGACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCC-CGCTGATG 353972 |||||||| | || ||||| ||| ||||| || ||| | ||| || || || || Sbjct 60094 CGACCATCTGCGACGTACCATTGTTCTGGGCAAAGAGCACCAACGAACTCTTCGTTG-TG 60152 Query 353973 AGATATAATAATCACACC-CCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCG 354031 ||| || |||| ||||| ||| | | | | ||| || || ||| | ||||| | Sbjct 60153 AGAAATCATAACGACACCTCCCTTGTAATCACG-AATGGCGACAGCAAGACCTCCAAGAG 60211 Query 354032 AGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACA 354091 ||||||| || | |||||| |||||||||||||| | | || ||||| | |||||| Sbjct 60212 AGTCACGATCCAAGAAATTGGTAGGTTCGTCAAGAACCAAAAGATGCGGGTTGTTCCACA 60271 Query 354092 TTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 | ||| ||||||| || ||||| ||||| ||||| || || || Sbjct 60272 TAGCTCCAGCCAGCACAACCTTGACCTTTTGTCCTCCAGAGAG 60314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471744526555875