Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1038 118 1e-20
seq485 93.3 5e-13
seq68 91.5 2e-12
>seq1038
Length=2915
Score = 118 bits (130), Expect = 1e-20
Identities = 95/115 (83%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| ||||| ||||||||||||||| |||| || || | || |||||| | || ||||||
Sbjct 1886 GCTGCCAATTACCTCGACATCAAGGCTCTCCTTGACGTCGGATGCAAGACCGTTGCCAAC 1945
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||| || || |||||||| ||||| || ||||||| | |||
Sbjct 1946 ATGATCAAGGGCAAGTCCCCGGAAGAGATCCGAAAGACATTCAACATCACGAACG 2000
>seq485
Length=41282
Score = 93.3 bits (102), Expect = 5e-13
Identities = 165/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || | | |||||| ||||| |||||||| | || |||||
Sbjct 7454 GCCTTCTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 7395
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||| ||| ||| || || | ||
Sbjct 7394 TTCTCCATGAAGTCGAAGGGGTTGGCAGATTTGTACACCTTGTCGTTACCAAGAGCAACG 7335
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || ||||| ||||| ||||||||||| || ||| | | | ||||||||| |
Sbjct 7334 AGGAGACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGTTCATGCCAAGA 7275
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
||||| || || | ||| ||| ||||||| || ||||| || |||||| ||||
Sbjct 7274 AGCGCGCATGGAAGAGCCTCAGTCAAGAACTCTTGTTCAATCTCAACAGCCTCGGTGATG 7215
Query 868931 A 868931
|
Sbjct 7214 A 7214
>seq68
Length=8748
Score = 91.5 bits (100), Expect = 2e-12
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507
||||||||| || |||||| ||||| ||||| || || || ||| || |||||
Sbjct 3620 CATAAAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTT 3679
Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567
|||||||||||| |||||| || | |||| || ||| |||||||| ||||| |||||
Sbjct 3680 ACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTA 3739
Query 1628568 GCAGGCAAAGGCGCC 1628582
| ||||| || ||
Sbjct 3740 GATTGCAAATGCACC 3754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106821199353375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |