Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1038 118 1e-20 seq485 93.3 5e-13 seq68 91.5 2e-12 >seq1038 Length=2915 Score = 118 bits (130), Expect = 1e-20 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||| ||||||||||||||| |||| || || | || |||||| | || |||||| Sbjct 1886 GCTGCCAATTACCTCGACATCAAGGCTCTCCTTGACGTCGGATGCAAGACCGTTGCCAAC 1945 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| || || |||||||| ||||| || ||||||| | ||| Sbjct 1946 ATGATCAAGGGCAAGTCCCCGGAAGAGATCCGAAAGACATTCAACATCACGAACG 2000 >seq485 Length=41282 Score = 93.3 bits (102), Expect = 5e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| ||||| |||||||| | || ||||| Sbjct 7454 GCCTTCTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 7395 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||| ||| ||| || || | || Sbjct 7394 TTCTCCATGAAGTCGAAGGGGTTGGCAGATTTGTACACCTTGTCGTTACCAAGAGCAACG 7335 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||| ||||| ||||||||||| || ||| | | | ||||||||| | Sbjct 7334 AGGAGACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGTTCATGCCAAGA 7275 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||||| || || | ||| ||| ||||||| || ||||| || |||||| |||| Sbjct 7274 AGCGCGCATGGAAGAGCCTCAGTCAAGAACTCTTGTTCAATCTCAACAGCCTCGGTGATG 7215 Query 868931 A 868931 | Sbjct 7214 A 7214 >seq68 Length=8748 Score = 91.5 bits (100), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||||||||| || |||||| ||||| ||||| || || || ||| || ||||| Sbjct 3620 CATAAAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTT 3679 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||||||||||| |||||| || | |||| || ||| |||||||| ||||| ||||| Sbjct 3680 ACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTA 3739 Query 1628568 GCAGGCAAAGGCGCC 1628582 | ||||| || || Sbjct 3740 GATTGCAAATGCACC 3754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106821199353375