Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3755 131 2e-25 seq68 131 2e-25 seq3721 122 8e-23 seq542 100 3e-16 >seq3755 Length=35748 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || |||||||| || || ||||| || ||| || | Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || ||||| || || |||||| Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| ||||| || || || || ||| | | | | || || || ||| Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 || |||||||| || || || |||||||| | || | || || || |||| Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGGAGGAA 18284 >seq68 Length=8748 Score = 131 bits (144), Expect = 2e-25 Identities = 426/652 (65%), Gaps = 25/652 (4%) Strand=Plus/Plus Query 139369 GGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATC 139428 |||||||| || | ||| | |||||| | ||| ||| |||| || |||||||||||| Sbjct 3579 GGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATC 3638 Query 139429 CACAAAGCGAACAGCAAAT--CGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC- 139485 ||||||||| | | | || || |||| || |||||| ||| ||| |||| Sbjct 3639 CACAAAGCGTAGAAGAGATCACGGGCGCGGACT--TCTTCCTTACCGTGGTT--CTTTCG 3694 Query 139486 -ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC 139544 | || || || || |||||||| |||||||| || || || ||||| || | ||| || Sbjct 3695 GAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACC 3754 Query 139545 TTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACAT 139601 || ||| ||||| || || || | || ||| ||| ||||| || || | ||| Sbjct 3755 AGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCAT 3814 Query 139602 CGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCGAGCTC 139657 ||| | | ||| | | | || ||||| || | | | | | || ||| | Sbjct 3815 AGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGT----AGCAC 3870 Query 139658 GGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCG 139716 ||| || | |||| ||||| || ||| | |||||| || | | | || || Sbjct 3871 GGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCT 3930 Query 139717 CGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGAC 139776 | | || ||||| ||||| || || || |||| ||| | || |||||||| Sbjct 3931 TG-AGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGAT 3989 Query 139777 GAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATT 139836 |||||||| | | || || || || | || || ||||| ||||| ||||| | Sbjct 3990 GAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTAT 4049 Query 139837 TGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCG 139896 | || |||||||| | ||| || || ||||| ||| | ||||| ||||| ||||| Sbjct 4050 TTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAATACCA 4109 Query 139897 ACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttC 139956 || | || ||||| | ||| ||||| ||||| || ||| || |||| | Sbjct 4110 ACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAGTCGAAGA 4169 Query 139957 AG--ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || | || ||| ||||||||| | || ||||| |||||||| || Sbjct 4170 AGGTATGATCG--CTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAGTC 4219 >seq3721 Length=43933 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || |||||| | ||||| ||| | | Sbjct 40807 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACGTTGGAAGTGGAATCTTCG 40866 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||||||||| || || || || || || ||| Sbjct 40867 GATACCATTGATAACGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAA 40926 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || ||| |||||||| |||| |||| ||||||||| Sbjct 40927 CAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGATGGCAGAACACTGTCTGATTATAAC 40986 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || ||||||||| Sbjct 40987 ATCCAGAAGGAGAGTACCCTGCACTTGGTG 41016 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || ||||| || || || || || || || ||| | |||| || | || | Sbjct 40366 AAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGACAAT 40425 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||||||||| || || || || ||||| || || |||||| |||| || Sbjct 40426 GTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGATTTTC 40485 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| ||||| || || || ||| | | || || || ||||| ||||||||||| Sbjct 40486 GCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAATCT 40545 Query 24899 ACACTACACTTGGTG 24913 || || ||||||||| Sbjct 40546 ACTCTTCACTTGGTG 40560 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || | || || || | | Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| || |||||||| || || || || || || || || Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || || ||||| |||||| | | | || || || ||| Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| || |||||||| |||||||| Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGT 40787 >seq542 Length=29042 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || ||||| || || || || || | |||| || | || | Sbjct 10076 AAGACCCTTACGGGAAAGACTATCACCCTTGAGGTGGAGTCTTCCGATACCATTGACAAT 10135 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || ||||| || || |||||||||||||||||||| Sbjct 10136 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAACAACGTTTGATCTTC 10195 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 ||||| || || || |||||| ||| | | ||||| || ||||| ||||||| Sbjct 10196 GCCGGAAAGCAACTTGAGGATGGACGAACCCTTTCAGACTACAACATCCAAAAGG 10250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449875808085000