Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 131 2e-25
seq68 131 2e-25
seq3721 122 8e-23
seq542 100 3e-16
>seq3755
Length=35748
Score = 131 bits (144), Expect = 2e-25
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || |||||||| || || ||||| || ||| || |
Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| ||||| || ||||| || || ||||||
Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||||||||||| ||||| || || || || ||| | | | | || || || |||
Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935
|| |||||||| || || || |||||||| | || | || || || ||||
Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGGAGGAA 18284
>seq68
Length=8748
Score = 131 bits (144), Expect = 2e-25
Identities = 426/652 (65%), Gaps = 25/652 (4%)
Strand=Plus/Plus
Query 139369 GGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATC 139428
|||||||| || | ||| | |||||| | ||| ||| |||| || ||||||||||||
Sbjct 3579 GGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATC 3638
Query 139429 CACAAAGCGAACAGCAAAT--CGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC- 139485
||||||||| | | | || || |||| || |||||| ||| ||| ||||
Sbjct 3639 CACAAAGCGTAGAAGAGATCACGGGCGCGGACT--TCTTCCTTACCGTGGTT--CTTTCG 3694
Query 139486 -ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC 139544
| || || || || |||||||| |||||||| || || || ||||| || | ||| ||
Sbjct 3695 GAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACC 3754
Query 139545 TTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACAT 139601
|| ||| ||||| || || || | || ||| ||| ||||| || || | |||
Sbjct 3755 AGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCAT 3814
Query 139602 CGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCGAGCTC 139657
||| | | ||| | | | || ||||| || | | | | | || ||| |
Sbjct 3815 AGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGT----AGCAC 3870
Query 139658 GGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCG 139716
||| || | |||| ||||| || ||| | |||||| || | | | || ||
Sbjct 3871 GGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCT 3930
Query 139717 CGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGAC 139776
| | || ||||| ||||| || || || |||| ||| | || ||||||||
Sbjct 3931 TG-AGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGAT 3989
Query 139777 GAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATT 139836
|||||||| | | || || || || | || || ||||| ||||| ||||| |
Sbjct 3990 GAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTAT 4049
Query 139837 TGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCG 139896
| || |||||||| | ||| || || ||||| ||| | ||||| ||||| |||||
Sbjct 4050 TTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAATACCA 4109
Query 139897 ACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttC 139956
|| | || ||||| | ||| ||||| ||||| || ||| || |||| |
Sbjct 4110 ACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAGTCGAAGA 4169
Query 139957 AG--ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006
|| || | || ||| ||||||||| | || ||||| |||||||| ||
Sbjct 4170 AGGTATGATCG--CTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAGTC 4219
>seq3721
Length=43933
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | ||||| || || |||||| | ||||| ||| | |
Sbjct 40807 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACGTTGGAAGTGGAATCTTCG 40866
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||||||||||||| || || || || || || |||
Sbjct 40867 GATACCATTGATAACGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAA 40926
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||| || || || ||| |||||||| |||| |||| |||||||||
Sbjct 40927 CAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGATGGCAGAACACTGTCTGATTATAAC 40986
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
|| || ||||| || || |||||||||
Sbjct 40987 ATCCAGAAGGAGAGTACCCTGCACTTGGTG 41016
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || ||||| || || || || || || || ||| | |||| || | || |
Sbjct 40366 AAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGACAAT 40425
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || ||||||||||| || || || || ||||| || || |||||| |||| ||
Sbjct 40426 GTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGATTTTC 40485
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
||||| ||||| || || || ||| | | || || || ||||| |||||||||||
Sbjct 40486 GCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAATCT 40545
Query 24899 ACACTACACTTGGTG 24913
|| || |||||||||
Sbjct 40546 ACTCTTCACTTGGTG 40560
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || ||||| || || || || | || || || | |
Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | ||||| || |||||||| || || || || || || || ||
Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||| | |||||||| || || ||||| |||||| | | | || || || |||
Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|||||||| || |||||||| ||||||||
Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGT 40787
>seq542
Length=29042
Score = 100 bits (110), Expect = 3e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || || || ||||| || || || || || | |||| || | || |
Sbjct 10076 AAGACCCTTACGGGAAAGACTATCACCCTTGAGGTGGAGTCTTCCGATACCATTGACAAT 10135
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || ||||| || || ||||||||||||||||||||
Sbjct 10136 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAACAACGTTTGATCTTC 10195
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893
||||| || || || |||||| ||| | | ||||| || ||||| |||||||
Sbjct 10196 GCCGGAAAGCAACTTGAGGATGGACGAACCCTTTCAGACTACAACATCCAAAAGG 10250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449875808085000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |