Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 134 9e-27
seq3721 107 1e-18
seq542 98.7 6e-16
>seq3755
Length=35748
Score = 134 bits (148), Expect = 9e-27
Identities = 162/218 (74%), Gaps = 8/218 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| ||| |||||| || ||||| ||||| || ||| |||| ||||
Sbjct 18304 AGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 18363
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| ||||||||||||| ||||| || || | || | |||||||||||
Sbjct 18364 TCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCC 18423
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| ||| || || || || | ||| ||
Sbjct 18424 TGGATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 18479
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979
||| || |||||||||||||| || |||||||||||||
Sbjct 18480 GGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCATGA 18517
>seq3721
Length=43933
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||| |||||||| || || || | | ||||
Sbjct 41018 AGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCCATCC 40959
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||||| |||||||||| ||| || ||||| | || | |||||||||||
Sbjct 40958 TCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 40899
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| |||||| | || | || | || || || | || ||||||
Sbjct 40898 TGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAATGGTC 40839
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | ||||| || |||||||||||
Sbjct 40838 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807
Score = 86.0 bits (94), Expect = 4e-12
Identities = 142/205 (69%), Gaps = 10/205 (5%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| || ||||| || ||||| ||||| || ||| | || | ||
Sbjct 40562 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCT 40503
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| || |||||||| ||||| ||||||||||| | || | |||||||| ||
Sbjct 40502 TCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCT 40443
Query 34886 TTTATTTTTTGTTTGAC-----GGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| |||| ||||| || ||||| |||| || |
Sbjct 40442 TGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGAT-----TCGACCTCAAGAGTGA 40388
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTAC 34965
||||||| || ||||| ||||| ||
Sbjct 40387 TGGTCTTGCCGGTGAGAGTCTTGAC 40363
>seq542
Length=29042
Score = 98.7 bits (108), Expect = 6e-16
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| || ||||| ||||| || ||| | || |||| || |||||||||||||||||||
Sbjct 10250 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGA 10191
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||||| || || | || | ||||||||||| | || || |||||
Sbjct 10190 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 10131
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| || | || | ||| || |||| ||| || ||||||||||| |||||||| || |
Sbjct 10130 CAATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACGA 10071
Query 34968 AG 34969
||
Sbjct 10070 AG 10069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325677418648625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |