Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 107 1e-18
>seq3721
Length=43933
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| |||||||| ||||| || ||||| ||||| ||||| || || | | ||| ||
Sbjct 40566 ACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCC 40507
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| ||||||||||| || || | |||| | |||||| ||||| ||||| ||||| ||
Sbjct 40506 GTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTT 40447
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| | || |||||| | || | || || ||| ||| || |||||||| ||
Sbjct 40446 ATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGAT 40387
Query 29751 AGTTTTGCCAGT 29762
|| ||||| ||
Sbjct 40386 GGTCTTGCCGGT 40375
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| || || || || |||||||||||||| || || | | || ||
Sbjct 40794 ACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCC 40735
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||| || || |||||| | || | | |||||| ||||| || |||||||| ||
Sbjct 40734 ATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTT 40675
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| | ||| || ||| | || | ||||| || || || || | || ||
Sbjct 40674 ATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGAT 40615
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | ||| || || || || |||||
Sbjct 40614 GGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| |||||||| || || || || || || ||||||||||| | | || |
Sbjct 41022 ACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCC 40963
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || || ||||| | ||||||| || || ||||| || |||||||| ||
Sbjct 40962 ATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 40903
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | ||| ||||| | || | || || ||| ||| ||||| | || ||
Sbjct 40902 GTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAAT 40843
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || || || || ||||||||
Sbjct 40842 GGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385201007421375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |