Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3721 107 1e-18 >seq3721 Length=43933 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| || ||||| ||||| ||||| || || | | ||| || Sbjct 40566 ACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCC 40507 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||||||||| || || | |||| | |||||| ||||| ||||| ||||| || Sbjct 40506 GTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTT 40447 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || |||||| | || | || || ||| ||| || |||||||| || Sbjct 40446 ATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGAT 40387 Query 29751 AGTTTTGCCAGT 29762 || ||||| || Sbjct 40386 GGTCTTGCCGGT 40375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || || |||||||||||||| || || | | || || Sbjct 40794 ACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCC 40735 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || |||||| | || | | |||||| ||||| || |||||||| || Sbjct 40734 ATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTT 40675 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||| || ||| | || | ||||| || || || || | || || Sbjct 40674 ATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGAT 40615 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || || || || ||||| Sbjct 40614 GGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || || || || || || ||||||||||| | | || | Sbjct 41022 ACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCC 40963 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || ||||| | ||||||| || || ||||| || |||||||| || Sbjct 40962 ATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 40903 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||||| | || | || || ||| ||| ||||| | || || Sbjct 40902 GTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAAT 40843 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || || |||||||| Sbjct 40842 GGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385201007421375