Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1915 140 2e-27 seq3536 105 5e-17 seq3023 104 2e-16 >seq1915 Length=29644 Score = 140 bits (154), Expect = 2e-27 Identities = 455/699 (65%), Gaps = 6/699 (1%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 |||||||| || || || || ||||| ||||| | ||| | || | || | | ||| Sbjct 24474 ACAAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACT 24533 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | || || |||| | ||| |||| |||||| ||||| ||||| | ||| Sbjct 24534 TCAAAGATACCCTCCTCAATGGTCAAGAGAGAAACATCGAAAGTTCCTCCACCAAGATCG 24593 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || || || || || | ||| || |||| ||| || Sbjct 24594 AAGATGAGGACGTTTCGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATAGCTGCT 24653 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || || || || | | ||| || |||||||| || ||||||||||| Sbjct 24654 GCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGACCAGCGATCAGGCCTGCATCTTTC 24713 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-AC 282480 || ||||||||||| ||||| | || || || || ||||| | || || | |||| || Sbjct 24714 GTAGCTTGTCTTTGCGAATCAGTGAAGTAAGCTGGGACAGTGACGACAGCGT-TGTTGAC 24772 Query 282481 TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540 | |||| ||||| || || | |||| || || | ||| |||||||| Sbjct 24773 AGTTCCACCAAGGTAAGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATAGATGAAAT 24832 Query 282541 TTGTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTAT 282599 || |||||| | ||||||| | || ||||| | ||||| | ||| || Sbjct 24833 TTCTTCTGGTGTGAATTGCTTAGCCTCGCCTTTGA-ACTCGACTTCGATGACTGGCTTTC 24891 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTG-GTCA 282658 || | || || || ||||| | | ||||| || | ||||| || || ||| Sbjct 24892 CGGCACGGTCGATGACCTTGAATGGGAAGTGCTTCATGTCCGCCTGAAC-CTCTGCGTCG 24950 Query 282659 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCA 282718 || | | ||| || | || || ||||| || | || || || || || | || Sbjct 24951 GCGAATTTACGACCGATCAGACGCTTAGCATCGAAGACTGTGTTTGTGGGGTTCATGGCG 25010 Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 282778 |||| | || || |||||||| |||||| | || || ||||| || | ||| | || Sbjct 25011 ACTTGGTTCTTTGCGGCATCTCCGATCAGACGCTCGGTGTCTGTGAAGGCAACGAACGAA 25070 Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 282838 |||||||| || || ||||| || || || |||||||| | | | ||| | | | | Sbjct 25071 GGAGTTGTTCGGTTTCCTTGGTCGTTGGCGATAATTTCGATTCTGTCATCACGGAAGATA 25130 Query 282839 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 282877 || ||||| | || || || ||||||||||| ||| Sbjct 25131 CCCACACAGGAGTAGGTGGTACCCAAATCAATACCGATA 25169 Score = 111 bits (122), Expect = 1e-18 Identities = 249/370 (67%), Gaps = 7/370 (2%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | || || ||||| |||||||| ||||| || | |||||||| Sbjct 23333 ATACCGTTGGCATCAATGTCGAAGGTGACCTCAATTTGTGGGACACCGCGAGGAGCAGGT 23392 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT--GAATTTTCGTT 281558 ||||| || | | || |||| ||| ||| || || ||||| || || || | Sbjct 23393 GGGATGCCGGTAAGCTCGAACTTTCCGAGAAGATTGTTGTCCTTAGTACGAGTTCTC--T 23450 Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 ||||||| || | || ||| || ||| ||| || || || | || | || ||| Sbjct 23451 CACCCTCAAACACCTGAATAAGCACACCAGGTTGGTTGTCGGAGAAGGTAGAGAAGACTT 23510 Query 281619 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 || || || || || || ||||| | | ||||| |||||||| ||||||| Sbjct 23511 CTGACTTCTTGGTTGGGATGGTGGTGTTGCGGTGAATAAGCTTGGTCATTTGTCCACCAG 23570 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTT 281736 | || || | ||| ||||| | || | ||| || | || | ||| | || | | | Sbjct 23571 CAGTCTCGATACCCAGAGACAATGGCGCGACGTCGAGAAGAAGAATTTCGTTGGTGGACT 23630 Query 281737 TTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795 | || | || | |||| || ||||| || || | ||||||||| ||||||||||| | Sbjct 23631 TGGATGAGGTGTCACCAGAGAGGATAGCAGCCTGGACAGCAGCACCGTATGCAACAGCCT 23690 Query 281796 CATCAGGATT 281805 |||| || || Sbjct 23691 CATCGGGGTT 23700 >seq3536 Length=11727 Score = 105 bits (116), Expect = 5e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 || || | || ||| || || || || || | || |||||||||||||| || | | | Sbjct 7545 TTATCCTCGTCTTTCTCGAGGCCGTAGGCGAGTGCGGCAGCAGTTGGTTCGTTGACTACT 7486 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 || | ||| || | |||||| ||| ||||||||||| || ||||| | |||||| ||| Sbjct 7485 CTGAGAACGTTCAAACCAGCGATTTGACCTGCATCTTTCGTTGCTTGACGTTGTGAGTCG 7426 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || ||||| |||||||||| ||| |||| Sbjct 7425 TTGAAGTATGCCGGAACAGTAACAACAGCAT 7395 >seq3023 Length=23922 Score = 104 bits (114), Expect = 2e-16 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 435085 TCCAGAGGTTTTTGTCGT-AATTCCTTTAT-CGAGGGTCTTGGACCTTTTGAATTTTTCT 435142 || |||||||| |||| ||||| | | | ||||| |||| || ||| || |||| Sbjct 13495 TCGAGAGGTTTC-GTCGAGAATTCATATCTTCGAGG-TCTTACCCCCACTGAGTTCTTCT 13552 Query 435143 TCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACTGCTGATACTG 435202 |||| | |||||||||||||||||| | ||| |||| || | || || || || |||| Sbjct 13553 TCCACGCCATGGCTGGTCGTGAAGGTTTGATTGATACTGCAGTCAAGACCGCAGAAACTG 13612 Query 435203 GTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAATATGATGGTA 435262 ||||||| ||| | ||||||||| ||||||||| ||| |||||||||||| Sbjct 13613 GTTATATCCAACGTCGTCTTGTCAAGGCTCTTGAAGATGTTATGGCGAAATATGATGGTA 13672 Query 435263 CAGTGAGAAATGCAAATGGTAAACTTATATCATGTGTTTATGGTGATAATGGT 435315 |||| |||| || ||| | | || | ||| |||||||| ||||| Sbjct 13673 CAGTCCGAAACTCACTTGGCGACATCGTACAGTTTGTCTATGGTGAGGATGGT 13725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740440153875750