Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1915 140 2e-27
seq3536 105 5e-17
seq3023 104 2e-16
>seq1915
Length=29644
Score = 140 bits (154), Expect = 2e-27
Identities = 455/699 (65%), Gaps = 6/699 (1%)
Strand=Plus/Plus
Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241
|||||||| || || || || ||||| ||||| | ||| | || | || | | |||
Sbjct 24474 ACAAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACT 24533
Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301
| || | || || |||| | ||| |||| |||||| ||||| ||||| | |||
Sbjct 24534 TCAAAGATACCCTCCTCAATGGTCAAGAGAGAAACATCGAAAGTTCCTCCACCAAGATCG 24593
Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361
|| || || || || || || || || || | ||| || |||| ||| ||
Sbjct 24594 AAGATGAGGACGTTTCGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATAGCTGCT 24653
Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421
|| || || || || || || | | ||| || |||||||| || |||||||||||
Sbjct 24654 GCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGACCAGCGATCAGGCCTGCATCTTTC 24713
Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-AC 282480
|| ||||||||||| ||||| | || || || || ||||| | || || | |||| ||
Sbjct 24714 GTAGCTTGTCTTTGCGAATCAGTGAAGTAAGCTGGGACAGTGACGACAGCGT-TGTTGAC 24772
Query 282481 TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540
| |||| ||||| || || | |||| || || | ||| ||||||||
Sbjct 24773 AGTTCCACCAAGGTAAGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATAGATGAAAT 24832
Query 282541 TTGTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTAT 282599
|| |||||| | ||||||| | || ||||| | ||||| | ||| ||
Sbjct 24833 TTCTTCTGGTGTGAATTGCTTAGCCTCGCCTTTGA-ACTCGACTTCGATGACTGGCTTTC 24891
Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTG-GTCA 282658
|| | || || || ||||| | | ||||| || | ||||| || || |||
Sbjct 24892 CGGCACGGTCGATGACCTTGAATGGGAAGTGCTTCATGTCCGCCTGAAC-CTCTGCGTCG 24950
Query 282659 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCA 282718
|| | | ||| || | || || ||||| || | || || || || || | ||
Sbjct 24951 GCGAATTTACGACCGATCAGACGCTTAGCATCGAAGACTGTGTTTGTGGGGTTCATGGCG 25010
Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 282778
|||| | || || |||||||| |||||| | || || ||||| || | ||| | ||
Sbjct 25011 ACTTGGTTCTTTGCGGCATCTCCGATCAGACGCTCGGTGTCTGTGAAGGCAACGAACGAA 25070
Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 282838
|||||||| || || ||||| || || || |||||||| | | | ||| | | | |
Sbjct 25071 GGAGTTGTTCGGTTTCCTTGGTCGTTGGCGATAATTTCGATTCTGTCATCACGGAAGATA 25130
Query 282839 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 282877
|| ||||| | || || || ||||||||||| |||
Sbjct 25131 CCCACACAGGAGTAGGTGGTACCCAAATCAATACCGATA 25169
Score = 111 bits (122), Expect = 1e-18
Identities = 249/370 (67%), Gaps = 7/370 (2%)
Strand=Plus/Plus
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
||||| |||||||| | || || ||||| |||||||| ||||| || | ||||||||
Sbjct 23333 ATACCGTTGGCATCAATGTCGAAGGTGACCTCAATTTGTGGGACACCGCGAGGAGCAGGT 23392
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT--GAATTTTCGTT 281558
||||| || | | || |||| ||| ||| || || ||||| || || || |
Sbjct 23393 GGGATGCCGGTAAGCTCGAACTTTCCGAGAAGATTGTTGTCCTTAGTACGAGTTCTC--T 23450
Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618
||||||| || | || ||| || ||| ||| || || || | || | || |||
Sbjct 23451 CACCCTCAAACACCTGAATAAGCACACCAGGTTGGTTGTCGGAGAAGGTAGAGAAGACTT 23510
Query 281619 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678
|| || || || || || ||||| | | ||||| |||||||| |||||||
Sbjct 23511 CTGACTTCTTGGTTGGGATGGTGGTGTTGCGGTGAATAAGCTTGGTCATTTGTCCACCAG 23570
Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTT 281736
| || || | ||| ||||| | || | ||| || | || | ||| | || | | |
Sbjct 23571 CAGTCTCGATACCCAGAGACAATGGCGCGACGTCGAGAAGAAGAATTTCGTTGGTGGACT 23630
Query 281737 TTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795
| || | || | |||| || ||||| || || | ||||||||| ||||||||||| |
Sbjct 23631 TGGATGAGGTGTCACCAGAGAGGATAGCAGCCTGGACAGCAGCACCGTATGCAACAGCCT 23690
Query 281796 CATCAGGATT 281805
|||| || ||
Sbjct 23691 CATCGGGGTT 23700
>seq3536
Length=11727
Score = 105 bits (116), Expect = 5e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382
|| || | || ||| || || || || || | || |||||||||||||| || | | |
Sbjct 7545 TTATCCTCGTCTTTCTCGAGGCCGTAGGCGAGTGCGGCAGCAGTTGGTTCGTTGACTACT 7486
Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442
|| | ||| || | |||||| ||| ||||||||||| || ||||| | |||||| |||
Sbjct 7485 CTGAGAACGTTCAAACCAGCGATTTGACCTGCATCTTTCGTTGCTTGACGTTGTGAGTCG 7426
Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCAT 282473
|| || ||||| |||||||||| ||| ||||
Sbjct 7425 TTGAAGTATGCCGGAACAGTAACAACAGCAT 7395
>seq3023
Length=23922
Score = 104 bits (114), Expect = 2e-16
Identities = 166/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 435085 TCCAGAGGTTTTTGTCGT-AATTCCTTTAT-CGAGGGTCTTGGACCTTTTGAATTTTTCT 435142
|| |||||||| |||| ||||| | | | ||||| |||| || ||| || ||||
Sbjct 13495 TCGAGAGGTTTC-GTCGAGAATTCATATCTTCGAGG-TCTTACCCCCACTGAGTTCTTCT 13552
Query 435143 TCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACTGCTGATACTG 435202
|||| | |||||||||||||||||| | ||| |||| || | || || || || ||||
Sbjct 13553 TCCACGCCATGGCTGGTCGTGAAGGTTTGATTGATACTGCAGTCAAGACCGCAGAAACTG 13612
Query 435203 GTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAATATGATGGTA 435262
||||||| ||| | ||||||||| ||||||||| ||| ||||||||||||
Sbjct 13613 GTTATATCCAACGTCGTCTTGTCAAGGCTCTTGAAGATGTTATGGCGAAATATGATGGTA 13672
Query 435263 CAGTGAGAAATGCAAATGGTAAACTTATATCATGTGTTTATGGTGATAATGGT 435315
|||| |||| || ||| | | || | ||| |||||||| |||||
Sbjct 13673 CAGTCCGAAACTCACTTGGCGACATCGTACAGTTTGTCTATGGTGAGGATGGT 13725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740440153875750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |