Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 150 4e-31
>seq3721
Length=43933
Score = 150 bits (166), Expect = 4e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || |||||||| ||| || ||||| || ||||||||||| || |||| ||
Sbjct 41022 ACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCC 40963
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || | || |||||||| ||||| | || ||||| || || || || || |||||
Sbjct 40962 ATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 40903
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||| ||||||| || || || ||||| ||||| || ||| |||||||| || ||
Sbjct 40902 GTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAAT 40843
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || ||||| ||||| || || ||||||||
Sbjct 40842 GGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807
Score = 131 bits (144), Expect = 3e-25
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || ||||| ||||||||||| || || || || || || |
Sbjct 40579 TACCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 40520
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || ||| |||||||| |||||||| || || || || || | ||| || || ||||
Sbjct 40519 AGAGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAG 40460
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||||||||| ||||| | || ||||| || || ||||| || ||| |
Sbjct 40459 GAATGCCCTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGA 40400
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798
| || | ||| || |||||||| || | ||||| ||
Sbjct 40399 CCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363
Score = 120 bits (132), Expect = 6e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| |||||||| || || ||||| || || || || || |
Sbjct 40807 TACCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGG 40748
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||||| | | || || || || || || ||||||||||| || | ||| || || || |
Sbjct 40747 ATAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTG 40688
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||||||||| || || | |||||||| || || || || | || |
Sbjct 40687 GGATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAA 40628
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || || ||||| || || | ||||| || || || |||||
Sbjct 40627 CCTCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981778453813625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |