Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq485 105 2e-17 >seq485 Length=41282 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| ||||| ||||| || || |||||| | | |||||||||||| | | ||| Sbjct 6938 TTCCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 6997 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 || || | | || || ||||||||| ||||||||| || ||||| || | | Sbjct 6998 CCTTCGCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCAT 7057 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || ||||||| ||||| ||||| ||||| |||||| |||| ||| | || |||||| Sbjct 7058 TCGCCTCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 7117 Query 131967 AATTCATCTCGAGAGATGAAG 131987 | ||||||| | || |||| Sbjct 7118 AGCTCATCTCCCGTGACGAAG 7138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186753876598875