Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 102 5e-17
seq3721 89.7 3e-13
>seq3755
Length=35748
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||||| || |||||| ||| ||||| |||||||| |||||
Sbjct 18289 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 18348
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || || | ||| || ||||| || |||||||| || ||||| | ||
Sbjct 18349 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGA 18408
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || || | ||| ||| | ||| || ||||| ||
Sbjct 18409 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTATCAGAGGATTCAAC 18467
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| |||||||| || | || || || |||||||||||
Sbjct 18468 CTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515
>seq3721
Length=43933
Score = 89.7 bits (98), Expect = 3e-13
Identities = 152/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || || || ||||| || || ||||| ||||| || ||||| | |
Sbjct 41022 ACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCC 40963
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| ||||| || ||||| || || ||||| ||||| || || | || | ||| || ||
Sbjct 40962 ATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 40903
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| || || || | || | ||| ||| || |||||||| || | ||| |
Sbjct 40902 GTCTTGGATCTT-TGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAA 40844
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || || || || || || || ||||||||||||
Sbjct 40843 TGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATA 40806
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328688476440000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |