Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3721 102 2e-16 seq68 100 7e-16 seq3755 93.3 1e-13 seq970 84.2 5e-11 >seq3721 Length=43933 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || || |||||||||||| ||| || Sbjct 40810 CAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACGTTGGAAGTGGAATCTTCGGAT 40869 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| ||||| || || || || |||||| || Sbjct 40870 ACCATTGATAACGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAACAG 40929 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| |||||||||||||| ||||| || || || | ||||| ||| || Sbjct 40930 CGATTGATCTTCGCTGGAAAGCAGTTGGAGGATGGCAGAACACTGTCTGATTATAACATC 40989 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||| ||| || ||| Sbjct 40990 CAGAAGGAGAGTACCCTGCAC 41010 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || |||||| | || || ||| ||| || || |||| Sbjct 40365 CAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGACAA 40424 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || || || ||| |||||| ||| | || || || Sbjct 40425 TGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGATTTT 40484 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || || | ||||| || | || | |||| |||||| |||| || || || Sbjct 40485 CGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAATC 40544 Query 206364 TACTCTTCAC 206373 |||||||||| Sbjct 40545 TACTCTTCAC 40554 >seq68 Length=8748 Score = 100 bits (110), Expect = 7e-16 Identities = 169/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 || |||||||| | ||||| || | || ||| | ||||||| | | |||| || | Sbjct 3408 GCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTAC 3467 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 ||||| | ||||||||| | ||| | | |||| ||||| || || || ||||||||| Sbjct 3468 CAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAG 3527 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || ||||||| || | ||||| | || | | || || ||| || ||||| | Sbjct 3528 AGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACATC 3587 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346 || |||| | ||| | | ||||| | |||||| ||||| || | | |||| | ||| Sbjct 3588 AGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCG 3647 Query 173347 TAGAA 173351 ||||| Sbjct 3648 TAGAA 3652 >seq3755 Length=35748 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| ||||| | || || ||| ||||| Sbjct 18512 CAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCTGAT 18453 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || |||||| || || ||| Sbjct 18452 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAA 18393 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| ||||| | ||||||||| | || | |||| |||||| || Sbjct 18392 CGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAACATC 18333 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || ||||| ||||||||| Sbjct 18332 CAAAAGGAGTCCACTCTTCAC 18312 >seq970 Length=89193 Score = 84.2 bits (92), Expect = 5e-11 Identities = 170/249 (68%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 101532 CAGCTTCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGAAAC 101591 ||||| |||| ||||| |||| ||| ||||| | || |||| | | | |||||| Sbjct 85012 CAGCT-CAGCAACCTTACGGACGTAGTTGTGGCGTTTTTCCTCACGAAGACGTGCGAAAC 85070 Query 101592 GAAGGGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTATGAA 101651 | ||||||||||| || || | ||||| ||||| |||||| ||| || ||||| | Sbjct 85071 GCAGGGCAGATTGACCACCACGACCGTGCTTCTTGGGCAAATCGACCGAGAACTTATGGA 85130 Query 101652 GAATTTTCTTGGTGTTCCCAGAGAGAGTCGCGAAAAGAGCAGAAGAACCGTCAAGAATAA 101711 || | ||||||| || || || |||| ||||| | || || | ||||| Sbjct 85131 TAACGTCTCTGGTGTTACCGCTAAGGGTGCCGAAGAGAGCTCCATTTCCATCCATAATAA 85190 Query 101712 TAAATCCGAATACATCGGA--AGATGTCAGAAGTTCAGAGAGACACTCGATATGGAATGA 101769 ||||||||||| || || ||| || || || | |||| |||| | |||||| Sbjct 85191 TAAATCCGAAT--TTCTGATCCGATTCCAACAGCTCCGCGAGAGCCTCGGTGTGGAATTT 85248 Query 101770 ACTGTCGCA 101778 | ||||||| Sbjct 85249 ATTGTCGCA 85257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181762124443875