Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 102 2e-16
seq68 100 7e-16
seq3755 93.3 1e-13
seq970 84.2 5e-11
>seq3721
Length=43933
Score = 102 bits (112), Expect = 2e-16
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || ||||| || || || |||||||||||| ||| ||
Sbjct 40810 CAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACGTTGGAAGTGGAATCTTCGGAT 40869
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| |||||| ||||| || || || || |||||| ||
Sbjct 40870 ACCATTGATAACGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAACAG 40929
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | |||||||| |||||||||||||| ||||| || || || | ||||| ||| ||
Sbjct 40930 CGATTGATCTTCGCTGGAAAGCAGTTGGAGGATGGCAGAACACTGTCTGATTATAACATC 40989
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| ||| ||| || |||
Sbjct 40990 CAGAAGGAGAGTACCCTGCAC 41010
Score = 86.0 bits (94), Expect = 1e-11
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
||| || ||||| || || || |||||| | || || ||| ||| || || ||||
Sbjct 40365 CAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGACAA 40424
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||| ||||| ||||| || || || ||| |||||| ||| | || || ||
Sbjct 40425 TGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGATTTT 40484
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|||||| || || | ||||| || | || | |||| |||||| |||| || || ||
Sbjct 40485 CGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAATC 40544
Query 206364 TACTCTTCAC 206373
||||||||||
Sbjct 40545 TACTCTTCAC 40554
>seq68
Length=8748
Score = 100 bits (110), Expect = 7e-16
Identities = 169/245 (69%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166
|| |||||||| | ||||| || | || ||| | ||||||| | | |||| || |
Sbjct 3408 GCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTAC 3467
Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226
||||| | ||||||||| | ||| | | |||| ||||| || || || |||||||||
Sbjct 3468 CAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAG 3527
Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286
|| ||||||| || | ||||| | || | | || || ||| || ||||| |
Sbjct 3528 AGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACATC 3587
Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346
|| |||| | ||| | | ||||| | |||||| ||||| || | | |||| | |||
Sbjct 3588 AGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCG 3647
Query 173347 TAGAA 173351
|||||
Sbjct 3648 TAGAA 3652
>seq3755
Length=35748
Score = 93.3 bits (102), Expect = 1e-13
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || ||||| ||||| | || || ||| |||||
Sbjct 18512 CAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCTGAT 18453
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || || |||||| || || |||
Sbjct 18452 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAA 18393
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||||||||| ||||| | ||||||||| | || | |||| |||||| ||
Sbjct 18392 CGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAACATC 18333
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
|| || ||||| |||||||||
Sbjct 18332 CAAAAGGAGTCCACTCTTCAC 18312
>seq970
Length=89193
Score = 84.2 bits (92), Expect = 5e-11
Identities = 170/249 (68%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 101532 CAGCTTCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGAAAC 101591
||||| |||| ||||| |||| ||| ||||| | || |||| | | | ||||||
Sbjct 85012 CAGCT-CAGCAACCTTACGGACGTAGTTGTGGCGTTTTTCCTCACGAAGACGTGCGAAAC 85070
Query 101592 GAAGGGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTATGAA 101651
| ||||||||||| || || | ||||| ||||| |||||| ||| || ||||| |
Sbjct 85071 GCAGGGCAGATTGACCACCACGACCGTGCTTCTTGGGCAAATCGACCGAGAACTTATGGA 85130
Query 101652 GAATTTTCTTGGTGTTCCCAGAGAGAGTCGCGAAAAGAGCAGAAGAACCGTCAAGAATAA 101711
|| | ||||||| || || || |||| ||||| | || || | |||||
Sbjct 85131 TAACGTCTCTGGTGTTACCGCTAAGGGTGCCGAAGAGAGCTCCATTTCCATCCATAATAA 85190
Query 101712 TAAATCCGAATACATCGGA--AGATGTCAGAAGTTCAGAGAGACACTCGATATGGAATGA 101769
||||||||||| || || ||| || || || | |||| |||| | ||||||
Sbjct 85191 TAAATCCGAAT--TTCTGATCCGATTCCAACAGCTCCGCGAGAGCCTCGGTGTGGAATTT 85248
Query 101770 ACTGTCGCA 101778
| |||||||
Sbjct 85249 ATTGTCGCA 85257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181762124443875
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |