Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq68 89.7 5e-13
seq3721 84.2 2e-11
seq485 82.4 7e-11
>seq68
Length=8748
Score = 89.7 bits (98), Expect = 5e-13
Identities = 175/257 (68%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 138144 GTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTATA 138203
|||||| |||||||| || ||| ||| || ||||| ||||| ||||| || ||
Sbjct 3884 GTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTGAGGGTATCGTA 3943
Query 138204 GATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGCAT 138263
|| || | || || || |||| |||| | || | || || || | ||||| |
Sbjct 3944 AATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGAGC--T 4001
Query 138264 TTTCATG--CCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACATTTTCGAGCGCATC 138321
| | || ||||| ||||| || || || |||||||| || ||| | ||||
Sbjct 4002 TGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTATTGGACATC 4061
Query 138322 AATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACGC 138381
|| | || | ||| || |||||||||||||| ||||| ||||| || || ||||||
Sbjct 4062 AAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAATACCAACGGCAACACGC 4121
Query 138382 ATCAGCATGTGTTGAGG 138398
|| | ||| ||||| ||
Sbjct 4122 ATGATCATTTGTTGTGG 4138
>seq3721
Length=43933
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 25199 ACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAA 25258
||||| || | ||||| | || |||||| | |||||| ||||| | || ||
Sbjct 40375 ACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGACAATGTCAAGTCT 40434
Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318
|| || ||||| ||||| || || || || |||||| | || |||| || ||| |||
Sbjct 40435 AAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGATTTTCGCCGGTAAA 40494
Query 25319 CAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCAT 25378
||||||||||| | ||| || ||| ||||| || ||||| ||||| || ||||
Sbjct 40495 CAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAATCTACTCTTCAC 40554
Query 25379 TTAGTG 25384
|| |||
Sbjct 40555 TTGGTG 40560
>seq485
Length=41282
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771
|||||| || || | ||| || || |||||| || ||||| || ||||| |||||
Sbjct 6728 GCTCGACGAGGTTTTCGTTAACAATTCCGTCGGATGCTGCGAAGAATGCGAGTACGTGAG 6669
Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831
| ||| | || || | || || ||| | ||||||||||| | || |||||| ||||
Sbjct 6668 AGATGAAGTAGCGCTCATCATCATTGAGTCTGTTGTTCCAGTCATGAAGGTCCTTTGACA 6609
Query 110832 TGTCGATCTCTTCGACCTTCCAG 110854
|||||||||||| || |||||
Sbjct 6608 AGTCGATCTCTTCTGCCGTCCAG 6586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445072840740000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |