Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq68 89.7 5e-13 seq3721 84.2 2e-11 seq485 82.4 7e-11 >seq68 Length=8748 Score = 89.7 bits (98), Expect = 5e-13 Identities = 175/257 (68%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 138144 GTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTATA 138203 |||||| |||||||| || ||| ||| || ||||| ||||| ||||| || || Sbjct 3884 GTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTGAGGGTATCGTA 3943 Query 138204 GATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGCAT 138263 || || | || || || |||| |||| | || | || || || | ||||| | Sbjct 3944 AATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGAGC--T 4001 Query 138264 TTTCATG--CCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACATTTTCGAGCGCATC 138321 | | || ||||| ||||| || || || |||||||| || ||| | |||| Sbjct 4002 TGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTATTGGACATC 4061 Query 138322 AATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACGC 138381 || | || | ||| || |||||||||||||| ||||| ||||| || || |||||| Sbjct 4062 AAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAATACCAACGGCAACACGC 4121 Query 138382 ATCAGCATGTGTTGAGG 138398 || | ||| ||||| || Sbjct 4122 ATGATCATTTGTTGTGG 4138 >seq3721 Length=43933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 25199 ACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAA 25258 ||||| || | ||||| | || |||||| | |||||| ||||| | || || Sbjct 40375 ACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGACAATGTCAAGTCT 40434 Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318 || || ||||| ||||| || || || || |||||| | || |||| || ||| ||| Sbjct 40435 AAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGATTTTCGCCGGTAAA 40494 Query 25319 CAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||| | ||| || ||| ||||| || ||||| ||||| || |||| Sbjct 40495 CAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAATCTACTCTTCAC 40554 Query 25379 TTAGTG 25384 || ||| Sbjct 40555 TTGGTG 40560 >seq485 Length=41282 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| || || | ||| || || |||||| || ||||| || ||||| ||||| Sbjct 6728 GCTCGACGAGGTTTTCGTTAACAATTCCGTCGGATGCTGCGAAGAATGCGAGTACGTGAG 6669 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | ||| | || || | || || ||| | ||||||||||| | || |||||| |||| Sbjct 6668 AGATGAAGTAGCGCTCATCATCATTGAGTCTGTTGTTCCAGTCATGAAGGTCCTTTGACA 6609 Query 110832 TGTCGATCTCTTCGACCTTCCAG 110854 |||||||||||| || ||||| Sbjct 6608 AGTCGATCTCTTCTGCCGTCCAG 6586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445072840740000