Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq485 104 3e-16 >seq485 Length=41282 Score = 104 bits (114), Expect = 3e-16 Identities = 206/298 (69%), Gaps = 9/298 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | ||||| |||||||||||||| ||||| ||||| || || ||| ||||| Sbjct 6550 GATCTGGCAGATGTAT-AAAAAGGCCGAGGCATCCTTCTGGACGGCAGAAGAGATCGACT 6608 Query 1455835 TCGGCGCCGACACGGTCC--ACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCAT 1455889 | | | | || || ||||| || | || || |||||| | ||||| Sbjct 6609 T-GTCAAAGG-ACCTTCATGACTGGAACAACAGACTCAATGATGATGAGCGCTACTTCAT 6666 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 | ||||| ||||| || || ||| || ||| || || || ||| ||||| | || Sbjct 6667 CTCTCACGTACTCGCATTCTT-CGCAGCATCCGACGGAATTGTTAACGAAAACCTCGTCG 6725 Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009 ||||| | || || ||| | || ||||| |||| || ||||| ||||| || Sbjct 6726 AGCGCTTCAGTGGTGAAGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGTTTCCAAATTA 6785 Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| ||||| || || ||||| |||||||||||| | ||||| Sbjct 6786 TGATGGAGAACATCCACTCCGAAACATATTCTCTCCTCATCGACACCTACATTAAGGA 6843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177437449127750