Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq485 104 3e-16
>seq485
Length=41282
Score = 104 bits (114), Expect = 3e-16
Identities = 206/298 (69%), Gaps = 9/298 (3%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | ||||| |||||||||||||| ||||| ||||| || || ||| |||||
Sbjct 6550 GATCTGGCAGATGTAT-AAAAAGGCCGAGGCATCCTTCTGGACGGCAGAAGAGATCGACT 6608
Query 1455835 TCGGCGCCGACACGGTCC--ACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCAT 1455889
| | | | || || ||||| || | || || |||||| | |||||
Sbjct 6609 T-GTCAAAGG-ACCTTCATGACTGGAACAACAGACTCAATGATGATGAGCGCTACTTCAT 6666
Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949
| ||||| ||||| || || ||| || ||| || || || ||| ||||| | ||
Sbjct 6667 CTCTCACGTACTCGCATTCTT-CGCAGCATCCGACGGAATTGTTAACGAAAACCTCGTCG 6725
Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009
||||| | || || ||| | || ||||| |||| || ||||| ||||| ||
Sbjct 6726 AGCGCTTCAGTGGTGAAGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGTTTCCAAATTA 6785
Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
|| || ||||||||||| ||||| || || ||||| |||||||||||| | |||||
Sbjct 6786 TGATGGAGAACATCCACTCCGAAACATATTCTCTCCTCATCGACACCTACATTAAGGA 6843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177437449127750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |