Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3721 113 4e-20 seq3755 100 3e-16 >seq3721 Length=43933 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||||||||||| || ||||| ||||| | || |||| | || || Sbjct 41016 CACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCCATCCTC 40957 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || |||||| || || || ||||| ||||| ||||||| || | | ||||||||| Sbjct 40956 CAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 40897 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||||| ||| | | | | || || |||||||| |||| ||| || || || Sbjct 40896 GATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAATGGTCTT 40837 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || |||||||| Sbjct 40836 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807 >seq3755 Length=35748 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||||| | | ||||| || | || ||||||||| |||||||| |||| Sbjct 18288 TCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 18347 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| || | || || || ||||| || || || ||||| || || || || | || Sbjct 18348 AAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGG 18407 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || | |||||||||| |||||| ||| | | | | | || || ||||| || Sbjct 18408 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAAC 18467 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| ||||||||||| | || || || || |||||||| Sbjct 18468 CTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450771764685000