Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq68 255 8e-63
>seq68
Length=8748
Score = 255 bits (282), Expect = 8e-63
Identities = 1143/1783 (64%), Gaps = 47/1783 (3%)
Strand=Plus/Plus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| || ||||| |||| |||||| | | ||||| || |||||||| ||||| || |||
Sbjct 2382 GTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 2441
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
||||| |||| ||| |||||||| || | ||| | || || |||
Sbjct 2442 CCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATA 2501
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
||||| ||||| ||||| ||||| | |||||| || | || || ||||||| | |
Sbjct 2502 TGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACA 2561
Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613
|| | ||| | ||| ||||| | ||||| ||| ||||| ||| |||||| |
Sbjct 2562 ATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 2621
Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670
| | | || || || || || || || | || || ||||| || | || |
Sbjct 2622 TTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGAC 2681
Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGC---GGATTAACTATTTGAAATTCC 68727
|||||| | || | || | || |||| || || ||||| | ||| ||||||
Sbjct 2682 CACAATCCCATGTC-GACAAGATCCTT--GAGAAGCCATGGGTTAACGACTTGGAATTCC 2738
Query 68728 CCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTT 68787
|| | ||| || | ||||| ||| || ||| || |||||||| | | | ||||||
Sbjct 2739 CCTGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAA 2798
Query 68788 CCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 68847
|| ||||| |||| || || ||||||||||| || || | ||||| || | | |
Sbjct 2799 CCGAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACA 2858
Query 68848 CCATGTGTTATGATTT-TATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAAC 68906
|| | | | |||| | |||| || | | ||| |||||||| || | ||| ||
Sbjct 2859 CCGTATTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGGTAGGTGTGAC 2917
Query 68907 ATTCCAAAGATCGTATTGTAGAATTC-CGTTACTTG---CATATGATCCATTATATGTTT 68962
||| | ||||||||| || ||| | || ||| || ||| || | || || |
Sbjct 2918 TCCCCACATATCGTATTGAAG--TTCGCCTT--TTGAGACAGGTGAGCCTTCGTAAGTCT 2973
Query 68963 CATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTG 69022
|||| | || || | ||| | ||| | | | |||||| ||| ||||| |
Sbjct 2974 CATAGGTACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAG 3033
Query 69023 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAA 69082
| ||||| || | ||||| | | ||||| | || ||||| || | || |
Sbjct 3034 TCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACTCAAATGGTAAACG-AAGA 3092
Query 69083 G--AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140
| || ||| ||||| || | || || || || | | ||||||| | || | |||
Sbjct 3093 GCCAAGAAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT 3151
Query 69141 TGAACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTC 69199
| ||||| | ||||| | | || || || || || || || || || || | || |
Sbjct 3152 -GCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCC 3210
Query 69200 GGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAA--- 69256
||| || |||| | || || | || || | || || | ||| || | |
Sbjct 3211 TGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGT 3270
Query 69257 -CAAACATATTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTG 69313
|| | || || || || | ||||| || ||||| || || |||| | ||
Sbjct 3271 CCACAAATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGG---TG 3327
Query 69314 CA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCT 69370
|| |||| | || ||||| || ||||| | || || || || || | |
Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387
Query 69371 GATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCT 69430
| || ||||| || || || || ||||||||||| || || || | || || || | |
Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447
Query 69431 GAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTC 69489
||| |||| ||| || | ||||| || || || ||| ||| || || |
Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGAT---GGTTTTGCGACCTCTAC 3504
Query 69490 --TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547
|| || ||||| ||| || |||||||||||| || | |||||| |||| |
Sbjct 3505 CTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACC 3564
Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607
|||| ||||| || |||||||||| || ||| | | | | | || || |||||||
Sbjct 3565 CAGGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAA 3624
Query 69608 ATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTG 69667
| ||||| |||||||| | ||| |||||||| | || | |||||| || ||
Sbjct 3625 AGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGT 3684
Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727
|| ||| || || |||||||| | || || | ||||| || || || || || |
Sbjct 3685 GGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTG 3744
Query 69728 CCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787
| | | || || || || ||||| ||||| || | ||||| ||||| || || | |
Sbjct 3745 CAAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAA 3804
Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847
||| ||||| || | ||||||||| || |||||||| || || | ||| || ||
Sbjct 3805 CTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAG 3864
Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907
| || || || | ||| ||||| || || || || |||| || || | |||||
Sbjct 3865 TAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCAC 3924
Query 69908 AACGT-TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966
|||| || | || || || ||||| || || ||||| || |||||| || || ||
Sbjct 3925 -ACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAG 3983
Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026
|| || | |||| ||| || || || || | |||||| || ||||| |||
Sbjct 3984 CATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTG 4043
Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATG 70085
|| |||| | || | || ||||| || ||||| || || ||||| ||| | ||
Sbjct 4044 AAGTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCG-TG 4102
Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128
||| || | || |||||||| | ||| || || || ||||||
Sbjct 4103 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 4145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686875527855000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |