Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq68 255 8e-63 >seq68 Length=8748 Score = 255 bits (282), Expect = 8e-63 Identities = 1143/1783 (64%), Gaps = 47/1783 (3%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || ||||| |||| |||||| | | ||||| || |||||||| ||||| || ||| Sbjct 2382 GTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 2441 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 ||||| |||| ||| |||||||| || | ||| | || || ||| Sbjct 2442 CCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATA 2501 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| ||||| ||||| ||||| | |||||| || | || || ||||||| | | Sbjct 2502 TGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACA 2561 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||| | ||| ||||| | ||||| ||| ||||| ||| |||||| | Sbjct 2562 ATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 2621 Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | || || || || || || || | || || ||||| || | || | Sbjct 2622 TTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGAC 2681 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGC---GGATTAACTATTTGAAATTCC 68727 |||||| | || | || | || |||| || || ||||| | ||| |||||| Sbjct 2682 CACAATCCCATGTC-GACAAGATCCTT--GAGAAGCCATGGGTTAACGACTTGGAATTCC 2738 Query 68728 CCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTT 68787 || | ||| || | ||||| ||| || ||| || |||||||| | | | |||||| Sbjct 2739 CCTGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAA 2798 Query 68788 CCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 68847 || ||||| |||| || || ||||||||||| || || | ||||| || | | | Sbjct 2799 CCGAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACA 2858 Query 68848 CCATGTGTTATGATTT-TATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAAC 68906 || | | | |||| | |||| || | | ||| |||||||| || | ||| || Sbjct 2859 CCGTATTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGGTAGGTGTGAC 2917 Query 68907 ATTCCAAAGATCGTATTGTAGAATTC-CGTTACTTG---CATATGATCCATTATATGTTT 68962 ||| | ||||||||| || ||| | || ||| || ||| || | || || | Sbjct 2918 TCCCCACATATCGTATTGAAG--TTCGCCTT--TTGAGACAGGTGAGCCTTCGTAAGTCT 2973 Query 68963 CATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTG 69022 |||| | || || | ||| | ||| | | | |||||| ||| ||||| | Sbjct 2974 CATAGGTACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAG 3033 Query 69023 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAA 69082 | ||||| || | ||||| | | ||||| | || ||||| || | || | Sbjct 3034 TCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACTCAAATGGTAAACG-AAGA 3092 Query 69083 G--AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 | || ||| ||||| || | || || || || | | ||||||| | || | ||| Sbjct 3093 GCCAAGAAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT 3151 Query 69141 TGAACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTC 69199 | ||||| | ||||| | | || || || || || || || || || || | || | Sbjct 3152 -GCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCC 3210 Query 69200 GGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAA--- 69256 ||| || |||| | || || | || || | || || | ||| || | | Sbjct 3211 TGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGT 3270 Query 69257 -CAAACATATTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTG 69313 || | || || || || | ||||| || ||||| || || |||| | || Sbjct 3271 CCACAAATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGG---TG 3327 Query 69314 CA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCT 69370 || |||| | || ||||| || ||||| | || || || || || | | Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387 Query 69371 GATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCT 69430 | || ||||| || || || || ||||||||||| || || || | || || || | | Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447 Query 69431 GAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTC 69489 ||| |||| ||| || | ||||| || || || ||| ||| || || | Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGAT---GGTTTTGCGACCTCTAC 3504 Query 69490 --TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 || || ||||| ||| || |||||||||||| || | |||||| |||| | Sbjct 3505 CTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACC 3564 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 |||| ||||| || |||||||||| || ||| | | | | | || || ||||||| Sbjct 3565 CAGGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAA 3624 Query 69608 ATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTG 69667 | ||||| |||||||| | ||| |||||||| | || | |||||| || || Sbjct 3625 AGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGT 3684 Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727 || ||| || || |||||||| | || || | ||||| || || || || || | Sbjct 3685 GGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTG 3744 Query 69728 CCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787 | | | || || || || ||||| ||||| || | ||||| ||||| || || | | Sbjct 3745 CAAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAA 3804 Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847 ||| ||||| || | ||||||||| || |||||||| || || | ||| || || Sbjct 3805 CTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAG 3864 Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 | || || || | ||| ||||| || || || || |||| || || | ||||| Sbjct 3865 TAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCAC 3924 Query 69908 AACGT-TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 |||| || | || || || ||||| || || ||||| || |||||| || || || Sbjct 3925 -ACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAG 3983 Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026 || || | |||| ||| || || || || | |||||| || ||||| ||| Sbjct 3984 CATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTG 4043 Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATG 70085 || |||| | || | || ||||| || ||||| || || ||||| ||| | || Sbjct 4044 AAGTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCG-TG 4102 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 ||| || | || |||||||| | ||| || || || |||||| Sbjct 4103 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 4145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686875527855000