Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 100 2e-16
>seq3721
Length=43933
Score = 100 bits (110), Expect = 2e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || ||||| || ||||||||||||| | | || ||||||| ||||| || ||
Sbjct 40262 GTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCAAGCTGCTTGCCT 40203
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || | |||||||| ||||| || | ||||| ||||| ||||||| | ||
Sbjct 40202 GCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGGATCTTGCTCTTG 40143
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
| | | || | ||||| ||| ||||| || ||||| || | ||||| ||
Sbjct 40142 ACGTTGTCGATGGTGTCGCTGGACTCAACCTCGAGAGTGATGGTCTTGCCGGT 40090
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | ||||| || ||||| || ||||||||| | | | || ||||||||
Sbjct 40559 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCG 40500
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| |||||||||||| |||| ||||| || || ||||| || | ||||| ||||| |
Sbjct 40499 AGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGG 40440
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| || | | || | || || | | ||| || || ||||| || | |||
Sbjct 40439 ATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTG 40380
Query 27219 CCCGTCAGAGTTTTCAC 27235
|| || ||||| || ||
Sbjct 40379 CCGGTGAGAGTCTTGAC 40363
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || ||||||||||| ||||||||| | | || | || |||
Sbjct 40787 ACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTCG 40728
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| ||||| || | || ||||| || || ||||| || | |||||| ||||| |
Sbjct 40727 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 40668
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|| || || | | || | ||||||| | ||||| || | || || | ||
Sbjct 40667 ATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTT 40608
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || || || ||||||||||||
Sbjct 40607 CCGGTAAGGGTCTTGACGAAGATTTGCATA 40578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424914331809000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |