Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq68 188 9e-43 >seq68 Length=8748 Score = 188 bits (208), Expect = 9e-43 Identities = 1166/1846 (63%), Gaps = 51/1846 (3%) Strand=Plus/Plus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 |||| ||||| ||| || | ||| | | ||||| |||||||| ||||||||||| | Sbjct 2383 TGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 2442 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGA-CTTTCC-AT 110448 || ||||||| || | |||||| || | | |||| ||| || || ||||| || Sbjct 2443 CTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATAT 2502 Query 110449 GAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAAT 110508 ||| |||||| ||| || |||| ||| || || | || ||||| | || Sbjct 2503 GAAT--GTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAAC 2560 Query 110509 GACATCCTTCATCTT--AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGG 110566 | | ||| | ||| ||||| || || || || |||||| ||| |||| Sbjct 2561 AA--TTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGA 2618 Query 110567 ATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA----TGAGATCCTTCATATC 110622 || | | ||| |||||||| ||||| ||| ||| || || | | |||||| | Sbjct 2619 ATGTTGGGGATGTTCTGGATTGAACC----GCCGTCAGCAATGATGCGGTTCTTCATGTT 2674 Query 110623 CTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAA 110682 | ||||| | || || | || || |||| || ||| || | || Sbjct 2675 GTCTGACCACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGACTTGGAA 2734 Query 110683 CTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATT 110742 || ||||| | | | | ||||||||| | |||||||||||| || || ||||| Sbjct 2735 TTCCCCTGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATT 2794 Query 110743 ATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACG 110802 | ||| | || || | ||| |||||||||||| || || | | | |||||| || Sbjct 2795 AAAACCGAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCG 2854 Query 110803 AAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTG-AGCTTGGTTT 110861 | ||| | | |||||| || ||| | ||||||||| | | | | ||| | Sbjct 2855 GACACCGTATTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGT 2914 Query 110862 CACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTT 110921 | || ||||||| || | ||||| | |||| || | || || || || | || | Sbjct 2915 GA-CTCCCCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCT 2973 Query 110922 CATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATG 110980 |||||| ||| | | | ||| | || |||| | || | | | ||||| || || Sbjct 2974 CATAGGTACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCA-GCGTGGTAAATA 3032 Query 110981 GTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCAC 111040 || || ||||| || | || | | ||| |||||| ||| ||||||| ||| | | Sbjct 3033 GTCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACTCAAATG-GTAAACGAAG 3091 Query 111041 A--AAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATAT 111098 | || ||| |||| || |||||||| ||||| | | | ||||| | ||| || | || Sbjct 3092 AGCCAAGAAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAAT 3150 Query 111099 TAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 111158 | ||||| || | ||||| || | || ||||||||| ||| | || Sbjct 3151 TGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCC 3210 Query 111159 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCA 111217 || ||| | | || | || ||||| |||| | || |||| | ||| |||| Sbjct 3211 TGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTC---CCTCGTTCA 3267 Query 111218 --TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTAT 111275 | ||| | |||| || || || ||||||| || || ||| ||||| Sbjct 3268 TGTCCACAAATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTG 3327 Query 111276 CTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTT 111335 | | ||| || | ||||||||| || | ||||| || ||| || || | ||||||| Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387 Query 111336 GGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCT 111395 |||| |||||||| ||||| ||||||||||| |||||| | || | || ||||| || | Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447 Query 111396 GTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTC 111452 | | | |||||| | | ||||| | ||| | |||| ||| | | | Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGC---TTTGATGGTTTTGCGACCTCTAC 3504 Query 111453 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 111512 | ||| ||| || | ||||| ||||| || || || || | || | | || Sbjct 3505 CTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCA-AC 3563 Query 111513 CTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATG 111571 | | || || || ||||| | || | ||| | || | || || |||||||| Sbjct 3564 CCAGGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATA 3623 Query 111572 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 111631 || || || |||||||||| | | |||||||| | || | ||||| | ||| Sbjct 3624 AAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCG 3683 Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691 ||||| ||| | || || ||||| | | || |||||||| |||||||| |||| | Sbjct 3684 TGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATT 3743 Query 111692 GCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTA 111745 || | || | ||||| ||| | || | ||||| | ||| || ||| Sbjct 3744 GC---AAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTG 3800 Query 111746 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT 111805 || || || ||||| || | |||||||| || | |||||| || || ||| | Sbjct 3801 AAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCA 3860 Query 111806 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865 | | || | | || |||| | || || || || || || || || Sbjct 3861 CCAGTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATA 3920 Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925 |||||| | | || || | || ||||| | ||| |||||||| || | || ||| Sbjct 3921 GCACACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGG 3980 Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985 ||||| || | || | | |||||||||||| ||| || || || | ||||| Sbjct 3981 AAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGG 4040 Query 111986 ATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 112044 |||| || | | ||||||| || ||| ||||| | | || || || || || || Sbjct 4041 GTGAA-GTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACC 4099 Query 112045 GTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATC 112104 ||| || || | || || ||||||| ||| | ||||| ||| | | ||||| Sbjct 4100 GTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATC 4159 Query 112105 GAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| || |||| || | || ||| ||||| |||| || ||||| Sbjct 4160 GAGTCGAAGAAGGTATGATC-GCTCGAGGGTCTTGAATCCGAAGTA 4204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628001579700000