Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq68 188 9e-43
>seq68
Length=8748
Score = 188 bits (208), Expect = 9e-43
Identities = 1166/1846 (63%), Gaps = 51/1846 (3%)
Strand=Plus/Plus
Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390
|||| ||||| ||| || | ||| | | ||||| |||||||| ||||||||||| |
Sbjct 2383 TGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 2442
Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGA-CTTTCC-AT 110448
|| ||||||| || | |||||| || | | |||| ||| || || ||||| ||
Sbjct 2443 CTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATAT 2502
Query 110449 GAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAAT 110508
||| |||||| ||| || |||| ||| || || | || ||||| | ||
Sbjct 2503 GAAT--GTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAAC 2560
Query 110509 GACATCCTTCATCTT--AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGG 110566
| | ||| | ||| ||||| || || || || |||||| ||| ||||
Sbjct 2561 AA--TTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGA 2618
Query 110567 ATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA----TGAGATCCTTCATATC 110622
|| | | ||| |||||||| ||||| ||| ||| || || | | |||||| |
Sbjct 2619 ATGTTGGGGATGTTCTGGATTGAACC----GCCGTCAGCAATGATGCGGTTCTTCATGTT 2674
Query 110623 CTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAA 110682
| ||||| | || || | || || |||| || ||| || | ||
Sbjct 2675 GTCTGACCACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGACTTGGAA 2734
Query 110683 CTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATT 110742
|| ||||| | | | | ||||||||| | |||||||||||| || || |||||
Sbjct 2735 TTCCCCTGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATT 2794
Query 110743 ATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACG 110802
| ||| | || || | ||| |||||||||||| || || | | | |||||| ||
Sbjct 2795 AAAACCGAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCG 2854
Query 110803 AAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTG-AGCTTGGTTT 110861
| ||| | | |||||| || ||| | ||||||||| | | | | ||| |
Sbjct 2855 GACACCGTATTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGT 2914
Query 110862 CACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTT 110921
| || ||||||| || | ||||| | |||| || | || || || || | || |
Sbjct 2915 GA-CTCCCCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCT 2973
Query 110922 CATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATG 110980
|||||| ||| | | | ||| | || |||| | || | | | ||||| || ||
Sbjct 2974 CATAGGTACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCA-GCGTGGTAAATA 3032
Query 110981 GTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCAC 111040
|| || ||||| || | || | | ||| |||||| ||| ||||||| ||| | |
Sbjct 3033 GTCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACTCAAATG-GTAAACGAAG 3091
Query 111041 A--AAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATAT 111098
| || ||| |||| || |||||||| ||||| | | | ||||| | ||| || | ||
Sbjct 3092 AGCCAAGAAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAAT 3150
Query 111099 TAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 111158
| ||||| || | ||||| || | || ||||||||| ||| | ||
Sbjct 3151 TGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCC 3210
Query 111159 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCA 111217
|| ||| | | || | || ||||| |||| | || |||| | ||| ||||
Sbjct 3211 TGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTC---CCTCGTTCA 3267
Query 111218 --TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTAT 111275
| ||| | |||| || || || ||||||| || || ||| |||||
Sbjct 3268 TGTCCACAAATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTG 3327
Query 111276 CTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTT 111335
| | ||| || | ||||||||| || | ||||| || ||| || || | |||||||
Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387
Query 111336 GGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCT 111395
|||| |||||||| ||||| ||||||||||| |||||| | || | || ||||| || |
Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447
Query 111396 GTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTC 111452
| | | |||||| | | ||||| | ||| | |||| ||| | | |
Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGC---TTTGATGGTTTTGCGACCTCTAC 3504
Query 111453 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 111512
| ||| ||| || | ||||| ||||| || || || || | || | | ||
Sbjct 3505 CTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCA-AC 3563
Query 111513 CTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATG 111571
| | || || || ||||| | || | ||| | || | || || ||||||||
Sbjct 3564 CCAGGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATA 3623
Query 111572 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 111631
|| || || |||||||||| | | |||||||| | || | ||||| | |||
Sbjct 3624 AAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCG 3683
Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691
||||| ||| | || || ||||| | | || |||||||| |||||||| |||| |
Sbjct 3684 TGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATT 3743
Query 111692 GCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTA 111745
|| | || | ||||| ||| | || | ||||| | ||| || |||
Sbjct 3744 GC---AAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTG 3800
Query 111746 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT 111805
|| || || ||||| || | |||||||| || | |||||| || || ||| |
Sbjct 3801 AAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCA 3860
Query 111806 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865
| | || | | || |||| | || || || || || || || ||
Sbjct 3861 CCAGTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATA 3920
Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925
|||||| | | || || | || ||||| | ||| |||||||| || | || |||
Sbjct 3921 GCACACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGG 3980
Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985
||||| || | || | | |||||||||||| ||| || || || | |||||
Sbjct 3981 AAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGG 4040
Query 111986 ATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 112044
|||| || | | ||||||| || ||| ||||| | | || || || || || ||
Sbjct 4041 GTGAA-GTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACC 4099
Query 112045 GTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATC 112104
||| || || | || || ||||||| ||| | ||||| ||| | | |||||
Sbjct 4100 GTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATC 4159
Query 112105 GAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
||| || |||| || | || ||| ||||| |||| || |||||
Sbjct 4160 GAGTCGAAGAAGGTATGATC-GCTCGAGGGTCTTGAATCCGAAGTA 4204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628001579700000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |