Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq68 141 1e-28 >seq68 Length=8748 Score = 141 bits (156), Expect = 1e-28 Identities = 529/820 (65%), Gaps = 21/820 (3%) Strand=Plus/Plus Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 ||| ||| || | |||||| ||||||| || || || ||||||||| | |||||||| Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 | || ||| | || || |||||||||||||||||| |||| | || ||||| |||| Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447 Query 118870 GGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTG---GCTCGCC 118926 | | || |||||| | | ||| | | ||| | ||| ||| ||| | Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTTTTGCGACCTCTAC 3504 Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986 | || | ||| || | ||||| ||||| || || || || | || | | || Sbjct 3505 CTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACC 3564 Query 118987 CTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 | || || || |||| || | || | ||| | || || || || |||||||| Sbjct 3565 CAGG-GCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATA 3623 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 ||||| || || ||||| | || |||||||||| || ||| ||||||| | || Sbjct 3624 AAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCG 3683 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || || | |||| ||| || | | || |||||||| || || ||||| | Sbjct 3684 TGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATT 3743 Query 119166 GCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 || | || || | |||| ||| |||||| ||||| |||||||| ||| Sbjct 3744 GCAAATGCACC---AGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTG 3800 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGAC 119279 || || || ||||| || | ||||||| ||| | ||||| || || ||| | Sbjct 3801 AAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCA 3860 Query 119280 TTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 119339 | | || | || ||| |||| | ||| || || || || || || || Sbjct 3861 CCAGTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATA 3920 Query 119340 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 119399 || ||| | |||| | |||| || |||||||| || |||| | | |||||| Sbjct 3921 GCACACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGG 3980 Query 119400 AAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 ||||| || | |||| || || |||||||||||| ||| || || || | ||||| Sbjct 3981 AAGCATGATGAAAGTTGA-GCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTG 4039 Query 119459 GATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCC 119517 | |||| || | | ||||||| || ||||||||| | | | || || || | Sbjct 4040 GGTGAA-GTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCAC 4098 Query 119518 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 |||||||||| | | || ||||| | ||| | ||| || Sbjct 4099 CGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 4138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618405244545000