Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq68 141 1e-28
>seq68
Length=8748
Score = 141 bits (156), Expect = 1e-28
Identities = 529/820 (65%), Gaps = 21/820 (3%)
Strand=Plus/Plus
Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809
||| ||| || | |||||| ||||||| || || || ||||||||| | ||||||||
Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387
Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869
| || ||| | || || |||||||||||||||||| |||| | || ||||| ||||
Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447
Query 118870 GGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTG---GCTCGCC 118926
| | || |||||| | | ||| | | ||| | ||| ||| ||| |
Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTTTTGCGACCTCTAC 3504
Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986
| || | ||| || | ||||| ||||| || || || || | || | | ||
Sbjct 3505 CTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACC 3564
Query 118987 CTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045
| || || || |||| || | || | ||| | || || || || ||||||||
Sbjct 3565 CAGG-GCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATA 3623
Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105
||||| || || ||||| | || |||||||||| || ||| ||||||| | ||
Sbjct 3624 AAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCG 3683
Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165
|| || || | |||| ||| || | | || |||||||| || || ||||| |
Sbjct 3684 TGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATT 3743
Query 119166 GCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219
|| | || || | |||| ||| |||||| ||||| |||||||| |||
Sbjct 3744 GCAAATGCACC---AGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTG 3800
Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGAC 119279
|| || || ||||| || | ||||||| ||| | ||||| || || ||| |
Sbjct 3801 AAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCA 3860
Query 119280 TTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 119339
| | || | || ||| |||| | ||| || || || || || || ||
Sbjct 3861 CCAGTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATA 3920
Query 119340 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 119399
|| ||| | |||| | |||| || |||||||| || |||| | | ||||||
Sbjct 3921 GCACACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGG 3980
Query 119400 AAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458
||||| || | |||| || || |||||||||||| ||| || || || | |||||
Sbjct 3981 AAGCATGATGAAAGTTGA-GCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTG 4039
Query 119459 GATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCC 119517
| |||| || | | ||||||| || ||||||||| | | | || || || |
Sbjct 4040 GGTGAA-GTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCAC 4098
Query 119518 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557
|||||||||| | | || ||||| | ||| | ||| ||
Sbjct 4099 CGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 4138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618405244545000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |