Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq68 221 1e-52
seq485 109 6e-19
>seq68
Length=8748
Score = 221 bits (244), Expect = 1e-52
Identities = 899/1396 (64%), Gaps = 37/1396 (3%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
||||| | ||| ||||||| || ||| | |||||||| || || || || || || |
Sbjct 4138 CCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGTGCC 4079
Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| ||||| ||| || ||||||| | | || |||| ||||| | || || || ||
Sbjct 4078 ATTGAGACCTACAACTTGATGTCCAATAAATAC-TTCACCCACGCCTCCCCTACACTTTT 4020
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
| |||||||||||| | | ||| | || |||||||| || | || ||||||||
Sbjct 4019 CTCCGCTGGTACACCACAAGCTCAACTTTCATCATGCTTCCTCATTGACATGAAGGAGGA 3960
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
||| | ||||| || | || || | | |||||| || || || || ||
Sbjct 3959 TAGTATCGATGGTATTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAAACGCCGG 3900
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520
|| || || | |||| || | | || | | | ||| || || ||
Sbjct 3899 TGGCATCGGTCTCAACATTCACAGAATCCGTGCTACTGGTGCCTACATTGCCGGTACCAA 3840
Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580
|||| | || |||||||| | || ||||| || || || ||| || ||| | |||||
Sbjct 3839 TGGTAACTCCAATGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCGAGATATGT 3780
Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634
| || | ||| ||||| | || | ||| |||| |||||||| |||||
Sbjct 3779 TGACCAGGGTGGAAACAAGCGTCCTGGTGCATTT---GCAATCTACCTTGAGCCTTGGCA 3723
Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694
||| || | | ||||| || || | || ||||| ||| | || || | ||
Sbjct 3722 CGCAGACGTTTTCGAGTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAGTCCGCGC 3663
Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754
||| |||||||||| |||| | |||||||| |||||||| |||||| | || || |||
Sbjct 3662 CCGTGATCTCTTCTACGCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCGAAAAGAA 3603
Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813
|| | ||| | || | ||||| || || || ||||| | | |||| || |
Sbjct 3602 CGGAGACTGGACACTGATGTGTCCCAACGAATGC-CCTGGGTTGGCTGATGTATACGGCG 3544
Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGA--CGGT 104871
| || || ||||| || || | || ||| | |||||| | | | | || | | |
Sbjct 3543 ATGAATTCGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAAACCAT 3486
Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931
||| | | ||| | | |||||| || ||||||||||||| || | ||||
Sbjct 3485 CAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAACCCATT 3426
Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991
|||||||||||| || || || || | ||||| || |||||||| | || ||
Sbjct 3425 CATGCTTTACAAGGATGCATGCAATAAGAAGAGCAACCAAAAGAACCTCGGCACCATTCG 3366
Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051
|| |||||||| || |||||||| | |||| | | |||||| ||| ||
Sbjct 3365 CAGCTCCAATCTGTGCACAGAAATTGTCGAATACTCTGCACCAGATGAAGTTGCTTGCTG 3306
Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTTGAT 105109
|||||| ||||| || |||||||| | | |||||| || || | | || | ||
Sbjct 3305 TAACCTGGCATCCATTGCTCTCCCAACATTTGTGGA--CATGAACGAGGGAACTTACGAC 3248
Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169
| |||| || ||||| ||||| || || || ||| | |||| | |||||
Sbjct 3247 TTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGGAACTTGAACAAGATCATTGAC 3188
Query 105170 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229
| || | |||||||| | || | || ||| | | ||||| || || | |
Sbjct 3187 ATCAACTACTACCCCGTCCAAGAAGCCAGAAAGAGCAATTTCCGTCACCGGCCTATCGCT 3128
Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCC 105286
||||||| || ||||| || |||| ||| | |||| || | ||||||| ||
Sbjct 3127 GTCGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTTTAC---CATTTGAGTCA 3071
Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346
||||| ||| | |||| | | || || ||||| || || ||||| || ||||
Sbjct 3070 CCTGAAGCTAAGCACCTCAACGTTCAAATCTTCGAGACTATTTACCACGCTGC-ATTGA- 3013
Query 105347 GCGAGTTC---AGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403
|| ||| ||| | || ||| ||| | ||||| || | || || || ||
Sbjct 3012 -CGTCTTCTGTTGAGATTGCTAAGGAGCTGGGTACCTATGAGACTTACGAAGGCTCACCT 2954
Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGA 105462
| ||| |||| | ||||||| |||||||||| | || | ||| | | | | ||
Sbjct 2953 GTCTCAAAAGGCGAACTTCAATACGATATGTGGGGA-GTCACACCTACCGACCTTTGGGA 2895
Query 105463 CTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521
|||||| |||| | ||| || |||||| | | ||| | || |||||| | ||| | |
Sbjct 2894 CTGGGATAGCT-TGAAGAAATCCATCAAACAATACGGTGTCCGCAACAGTTTGCTCGTTG 2836
Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581
| || |||||||||||| ||| | || || | ||| |||||| || || ||||| |
Sbjct 2835 CCCCTATGCCAACAGCCAGTACCTCTCAGATTCTCGGTTTTAATGAGTGTTTCGAACCAT 2776
Query 105582 ACACGACGAACATCTA 105597
|||| | ||||||||
Sbjct 2775 ACACATCTAACATCTA 2760
>seq485
Length=41282
Score = 109 bits (120), Expect = 6e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 94790
|||||||| || ||| | ||||| || || |||||| | | ||| || | ||||| |
Sbjct 6934 ACAGTTCCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 6993
Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850
| | |||| ||| | || || | || ||||| |||||| || || |||||| |||
Sbjct 6994 TC-TACCTTCGCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGG 7052
Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910
|| ||| | |||| | ||||||||||| || || | ||| | |||||| |||||
Sbjct 7053 ATCATTCGCCTCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTC 7112
Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
||| ||||| ||||| |||||||| || || |||
Sbjct 7113 CAATGAGCTCATCTCCCGTGACGAAGGTCTTCAC 7146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583232548305000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |