Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq68 221 1e-52 seq485 109 6e-19 >seq68 Length=8748 Score = 221 bits (244), Expect = 1e-52 Identities = 899/1396 (64%), Gaps = 37/1396 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| ||||||| || ||| | |||||||| || || || || || || | Sbjct 4138 CCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGTGCC 4079 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||||| | | || |||| ||||| | || || || || Sbjct 4078 ATTGAGACCTACAACTTGATGTCCAATAAATAC-TTCACCCACGCCTCCCCTACACTTTT 4020 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 | |||||||||||| | | ||| | || |||||||| || | || |||||||| Sbjct 4019 CTCCGCTGGTACACCACAAGCTCAACTTTCATCATGCTTCCTCATTGACATGAAGGAGGA 3960 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| | ||||| || | || || | | |||||| || || || || || Sbjct 3959 TAGTATCGATGGTATTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAAACGCCGG 3900 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || || || | |||| || | | || | | | ||| || || || Sbjct 3899 TGGCATCGGTCTCAACATTCACAGAATCCGTGCTACTGGTGCCTACATTGCCGGTACCAA 3840 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 |||| | || |||||||| | || ||||| || || || ||| || ||| | ||||| Sbjct 3839 TGGTAACTCCAATGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCGAGATATGT 3780 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 | || | ||| ||||| | || | ||| |||| |||||||| ||||| Sbjct 3779 TGACCAGGGTGGAAACAAGCGTCCTGGTGCATTT---GCAATCTACCTTGAGCCTTGGCA 3723 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| || | | ||||| || || | || ||||| ||| | || || | || Sbjct 3722 CGCAGACGTTTTCGAGTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAGTCCGCGC 3663 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| |||||||||| |||| | |||||||| |||||||| |||||| | || || ||| Sbjct 3662 CCGTGATCTCTTCTACGCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCGAAAAGAA 3603 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 || | ||| | || | ||||| || || || ||||| | | |||| || | Sbjct 3602 CGGAGACTGGACACTGATGTGTCCCAACGAATGC-CCTGGGTTGGCTGATGTATACGGCG 3544 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGA--CGGT 104871 | || || ||||| || || | || ||| | |||||| | | | | || | | | Sbjct 3543 ATGAATTCGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAAACCAT 3486 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 ||| | | ||| | | |||||| || ||||||||||||| || | |||| Sbjct 3485 CAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAACCCATT 3426 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||||||||| || || || || | ||||| || |||||||| | || || Sbjct 3425 CATGCTTTACAAGGATGCATGCAATAAGAAGAGCAACCAAAAGAACCTCGGCACCATTCG 3366 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 || |||||||| || |||||||| | |||| | | |||||| ||| || Sbjct 3365 CAGCTCCAATCTGTGCACAGAAATTGTCGAATACTCTGCACCAGATGAAGTTGCTTGCTG 3306 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTTGAT 105109 |||||| ||||| || |||||||| | | |||||| || || | | || | || Sbjct 3305 TAACCTGGCATCCATTGCTCTCCCAACATTTGTGGA--CATGAACGAGGGAACTTACGAC 3248 Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169 | |||| || ||||| ||||| || || || ||| | |||| | ||||| Sbjct 3247 TTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGGAACTTGAACAAGATCATTGAC 3188 Query 105170 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 | || | |||||||| | || | || ||| | | ||||| || || | | Sbjct 3187 ATCAACTACTACCCCGTCCAAGAAGCCAGAAAGAGCAATTTCCGTCACCGGCCTATCGCT 3128 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCC 105286 ||||||| || ||||| || |||| ||| | |||| || | ||||||| || Sbjct 3127 GTCGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTTTAC---CATTTGAGTCA 3071 Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 ||||| ||| | |||| | | || || ||||| || || ||||| || |||| Sbjct 3070 CCTGAAGCTAAGCACCTCAACGTTCAAATCTTCGAGACTATTTACCACGCTGC-ATTGA- 3013 Query 105347 GCGAGTTC---AGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 || ||| ||| | || ||| ||| | ||||| || | || || || || Sbjct 3012 -CGTCTTCTGTTGAGATTGCTAAGGAGCTGGGTACCTATGAGACTTACGAAGGCTCACCT 2954 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGA 105462 | ||| |||| | ||||||| |||||||||| | || | ||| | | | | || Sbjct 2953 GTCTCAAAAGGCGAACTTCAATACGATATGTGGGGA-GTCACACCTACCGACCTTTGGGA 2895 Query 105463 CTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 |||||| |||| | ||| || |||||| | | ||| | || |||||| | ||| | | Sbjct 2894 CTGGGATAGCT-TGAAGAAATCCATCAAACAATACGGTGTCCGCAACAGTTTGCTCGTTG 2836 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || |||||||||||| ||| | || || | ||| |||||| || || ||||| | Sbjct 2835 CCCCTATGCCAACAGCCAGTACCTCTCAGATTCTCGGTTTTAATGAGTGTTTCGAACCAT 2776 Query 105582 ACACGACGAACATCTA 105597 |||| | |||||||| Sbjct 2775 ACACATCTAACATCTA 2760 >seq485 Length=41282 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 94790 |||||||| || ||| | ||||| || || |||||| | | ||| || | ||||| | Sbjct 6934 ACAGTTCCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 6993 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | | |||| ||| | || || | || ||||| |||||| || || |||||| ||| Sbjct 6994 TC-TACCTTCGCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGG 7052 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || ||| | |||| | ||||||||||| || || | ||| | |||||| ||||| Sbjct 7053 ATCATTCGCCTCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTC 7112 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| ||||| |||||||| || || ||| Sbjct 7113 CAATGAGCTCATCTCCCGTGACGAAGGTCTTCAC 7146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583232548305000