Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1915 203 1e-46
seq3721 150 5e-31
seq3023 131 5e-25
seq3366 93.3 1e-13
seq68 84.2 7e-11
>seq1915
Length=29644
Score = 203 bits (224), Expect = 1e-46
Identities = 487/735 (66%), Gaps = 10/735 (1%)
Strand=Plus/Minus
Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260
||| || || ||||| ||||| || || || ||||| | | | | | |||| | |
Sbjct 25169 TATCGGTATTGATTTGGGTACCACCTACTCCTGTGTGGGTATCTTCCGTGATGACAGAAT 25110
Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320
||||| || || || || ||||| ||| ||||||| || || | |||||| || || ||
Sbjct 25109 CGAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCCTTCACAGA 25050
Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380
|| |||||| |||| || ||| | ||||| || |||| || || || | ||| ||
Sbjct 25049 CACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCACAAACAC 24990
Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGA 349440
|| || ||||||||||| || || ||| | | || | ||| | || | ||
Sbjct 24989 AGTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACGCAGAGGTTCAGGCGGA 24930
Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATTATTGA 349497
| || || || || || | || | ||| ||| || ||| | || ||
Sbjct 24929 CATGAAGCACTTCCCATTCAAGGTCATC------GACCGTGCCGGAAAGCCAGTCATCGA 24876
Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557
|| || | ||||| || || ||||| ||| |||||||||||||| ||||| ||
Sbjct 24875 AGTCGAGTTCAAAGGCGAGGCTAAGCAATTCACACCAGAAGAAATTTCATCTATGGTCTT 24816
Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617
|| || |||| ||| | |||||| || || | |||| ||| || | | ||||| |
Sbjct 24815 GGTCAAGATGAGGGAGACTGCTGAGGCTTACCTTGGTGGAACTGTCAACAACGCTGTCGT 24756
Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677
||||| ||||| || || | |||| | || | || || |||||||| ||| ||
Sbjct 24755 CACTGTCCCAGCTTACTTCACTGATTCGCAAAGACAAGCTACGAAAGATGCAGGCCTGAT 24696
Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737
|| || | || ||||| | || || || || || || || ||||| ||||| || ||
Sbjct 24695 CGCTGGTCTCAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCAGCTATTGCTTACGG 24636
Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797
| || || | | ||| || ||| | || || || ||| | ||||| || ||
Sbjct 24635 TTTGGACAAGAAGGTTGAGGGTGAGCGAAACGTCCTCATCTTCGATCTTGGTGGAGGAAC 24576
Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857
||| ||||| || || | || |||| ||||| || |||||||| || | || |||||
Sbjct 24575 TTTCGATGTTTCTCTCTTGACCATTGAGGAGGGTATCTTTGAAGTCAAGTCCACCGCTGG 24516
Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917
||| || || | ||||| || || || || || ||||| ||| || || || || ||
Sbjct 24515 TGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTTGTTAACCACTTCGTAAATGA 24456
Query 349918 ATTTAAGCGTCAAGC 349932
|| || || |||||
Sbjct 24455 GTTCAAACG-CAAGC 24442
>seq3721
Length=43933
Score = 150 bits (166), Expect = 5e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | || || || |||||||||||||| || || ||
Sbjct 40809 CATACCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTC 40750
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|||| || || ||||| || || || || ||||||||||| ||||||||||| || ||
Sbjct 40749 GGATAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGG 40690
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||| || ||||| | |||||||| || || | || || | ||
Sbjct 40689 TGGGATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTC 40630
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || | ||| | ||||||||||| || || || || || || |||||
Sbjct 40629 AACCTCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Score = 145 bits (160), Expect = 2e-29
Identities = 166/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || | ||||||||||| || ||||| || || |
Sbjct 40585 TTTGCATACCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGT 40526
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | ||||| || ||||| |||||||| || || || || ||||||||||| |
Sbjct 40525 AGTCGGAGAGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGT 40466
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| |||||||| || || ||||| || || |||| || ||||| || || | ||| || |
Sbjct 40465 CCGGAGGAATGCCCTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAG 40406
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||| || ||||| || | ||||| ||||| || || || ||
Sbjct 40405 ATTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363
Score = 111 bits (122), Expect = 5e-19
Identities = 150/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589
|||| || || ||| ||| || || || ||||||||||| | ||||| ||||| || |
Sbjct 41013 CAAG-TGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCCATCCTCCA 40955
Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649
|| |||||||| ||||| | || || || || || || || || || || || || |
Sbjct 40954 ACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGGA 40895
Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709
| || | || || |||||||| | ||| || | ||| ||||| | |||| |||||||
Sbjct 40894 TCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAATGGTCTTTC 40835
Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||| | || || || || ||||||||
Sbjct 40834 CGGTCAAAGTCTTGACGAAGATCTGCAT 40807
Score = 100 bits (110), Expect = 9e-16
Identities = 153/213 (72%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| ||||| | | || || ||||| ||||||||||| ||||| || || |
Sbjct 40300 TTTGCATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGT 40241
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || || || || |||||||| || || || || ||||| | || || || |
Sbjct 40240 AGTCGCTCAAGGTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGT 40181
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || |||||||| || |||||||| || || ||| || || || || || | || | |
Sbjct 40180 CCGGGGGAATTCCCTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTC-GCT 40123
Query 140682 GG-TTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| ||||| || || || | ||||| |||||
Sbjct 40122 GGACTCAACCTCGAGAGTGATGGTCTTGCCGGT 40090
>seq3023
Length=23922
Score = 131 bits (144), Expect = 5e-25
Identities = 220/317 (69%), Gaps = 6/317 (2%)
Strand=Plus/Minus
Query 378183 ATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGT 378242
||||||| | |||| | |||||| | || || | ||| || || |||||||||||
Sbjct 13668 ATCATATTTCGCCATAACATCTTCAAGAGCCTTGACAAGACGACGTTGGATATAACCAGT 13609
Query 378243 TTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAA 378302
|| || || |||||||||||||| ||||| |||||||| |||| || ||||||||
Sbjct 13608 TTCTGCGGTCTTGACTGCAGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAA 13549
Query 378303 TAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGG 378362
|| ||||| || ||||| || | || | ||||| |||| | || ||||| | | ||
Sbjct 13548 GAACTCAGTGGGGGTAAGACCTCGAAGATATGAATTCTCGACGAAACCTCTCGATTCAGG 13489
Query 378363 CGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCG 378422
|| | ||| | || || |||| || | || | | | ||| || | ||||| ||
Sbjct 13488 AGAGTAATCGTCCTTGGTGAAATGCGGCAGAGTTCTGTATTTAAAACCGAACGGAATACG 13429
Query 378423 TTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAGCAATATTTAAATC 378479
||| || || ||| |||||||| |||| || || ||| || | |||||| | |
Sbjct 13428 TTTACCCTCGACAGACTGTTGACCCACAAGCGCGGA---CATCTGGGAAATATTGATAGT 13372
Query 378480 ACTACCTTTAGACCCAG 378496
| |||||||| ||||
Sbjct 13371 AGATCCTTTAGAACCAG 13355
>seq3366
Length=31922
Score = 93.3 bits (102), Expect = 1e-13
Identities = 235/357 (66%), Gaps = 3/357 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
|| ||||| || || | ||| || | | ||||||||||||| | || ||| |||| ||
Sbjct 29652 CCAGAAGAGATCTCCGCCATGATTCTTGGTAAAATGAAGGAAGTCGCCGAATCATACTTG 29711
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|| | | || || | |||||| |||| || || ||||| || || || ||| |
Sbjct 29712 GGAAAGAAGGTCACCCACGCTGTTGTTACAGTCCCGGCCTACTTCAACGACAACCAAAGA 29771
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
||||| ||||| || || | ||||| || || | || || | || | || |||
Sbjct 29772 CAGGCAACCAAAGACGCCGGTACTATTGCCGGTTTGGAAGTCCTTCGTATCGTCAACGAA 29831
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
||||| || ||||| || || || || | || || || ||| |||| | ||
Sbjct 29832 CCCACCGCCGCAGCTATCGCCTACGGTTTGGACAA---GACTGAGGGAGAACGTCAAATC 29888
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
|| | | ||| | ||||| || ||||| ||||| || || || | |||| ||
Sbjct 29889 ATTGTCTACGATCTTGGTGGAGGAACTTTCGATGTTTCCCTTCTCTCTATTGACCGTGGC 29948
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888
|||| || ||| | || || ||||| || || | || ||||||||||| |||
Sbjct 29949 GTTTTCGAGGTTCTTTCTACCGCCGGTGACACTCACTTGGGAGGAGAAGATTTCGAT 30005
>seq68
Length=8748
Score = 84.2 bits (92), Expect = 7e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 202720 GAATAAATATTACTTGTAAATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTA 202779
|| || || ||| ||| ||||||| ||||| |||||| ||| | ||| ||| ||||
Sbjct 2757 GAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACCGAGAATCTGAGAGGTA 2816
Query 202780 CTAGCAGTTGGCATAGGTGCAACTAGTAAACTATTGCGAAGCCCATATTCTTTAAT 202835
|| || ||||||||||| ||||| || ||||| ||||| | || |||| ||| ||
Sbjct 2817 CTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACCGTATTGTTTGAT 2872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515179169986625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |