Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1915 203 1e-46 seq3721 150 5e-31 seq3023 131 5e-25 seq3366 93.3 1e-13 seq68 84.2 7e-11 >seq1915 Length=29644 Score = 203 bits (224), Expect = 1e-46 Identities = 487/735 (66%), Gaps = 10/735 (1%) Strand=Plus/Minus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || || ||||| ||||| || || || ||||| | | | | | |||| | | Sbjct 25169 TATCGGTATTGATTTGGGTACCACCTACTCCTGTGTGGGTATCTTCCGTGATGACAGAAT 25110 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 ||||| || || || || ||||| ||| ||||||| || || | |||||| || || || Sbjct 25109 CGAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCCTTCACAGA 25050 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380 || |||||| |||| || ||| | ||||| || |||| || || || | ||| || Sbjct 25049 CACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCACAAACAC 24990 Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGA 349440 || || ||||||||||| || || ||| | | || | ||| | || | || Sbjct 24989 AGTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACGCAGAGGTTCAGGCGGA 24930 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATTATTGA 349497 | || || || || || | || | ||| ||| || ||| | || || Sbjct 24929 CATGAAGCACTTCCCATTCAAGGTCATC------GACCGTGCCGGAAAGCCAGTCATCGA 24876 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 || || | ||||| || || ||||| ||| |||||||||||||| ||||| || Sbjct 24875 AGTCGAGTTCAAAGGCGAGGCTAAGCAATTCACACCAGAAGAAATTTCATCTATGGTCTT 24816 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || || |||| ||| | |||||| || || | |||| ||| || | | ||||| | Sbjct 24815 GGTCAAGATGAGGGAGACTGCTGAGGCTTACCTTGGTGGAACTGTCAACAACGCTGTCGT 24756 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||| ||||| || || | |||| | || | || || |||||||| ||| || Sbjct 24755 CACTGTCCCAGCTTACTTCACTGATTCGCAAAGACAAGCTACGAAAGATGCAGGCCTGAT 24696 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || | || ||||| | || || || || || || || ||||| ||||| || || Sbjct 24695 CGCTGGTCTCAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCAGCTATTGCTTACGG 24636 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 | || || | | ||| || ||| | || || || ||| | ||||| || || Sbjct 24635 TTTGGACAAGAAGGTTGAGGGTGAGCGAAACGTCCTCATCTTCGATCTTGGTGGAGGAAC 24576 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||| ||||| || || | || |||| ||||| || |||||||| || | || ||||| Sbjct 24575 TTTCGATGTTTCTCTCTTGACCATTGAGGAGGGTATCTTTGAAGTCAAGTCCACCGCTGG 24516 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| || || || || || ||||| ||| || || || || || Sbjct 24515 TGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTTGTTAACCACTTCGTAAATGA 24456 Query 349918 ATTTAAGCGTCAAGC 349932 || || || ||||| Sbjct 24455 GTTCAAACG-CAAGC 24442 >seq3721 Length=43933 Score = 150 bits (166), Expect = 5e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || || |||||||||||||| || || || Sbjct 40809 CATACCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTC 40750 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 |||| || || ||||| || || || || ||||||||||| ||||||||||| || || Sbjct 40749 GGATAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGG 40690 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| || ||||| | |||||||| || || | || || | || Sbjct 40689 TGGGATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTC 40630 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || | ||| | ||||||||||| || || || || || || ||||| Sbjct 40629 AACCTCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | ||||||||||| || ||||| || || | Sbjct 40585 TTTGCATACCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGT 40526 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||||| || ||||| |||||||| || || || || ||||||||||| | Sbjct 40525 AGTCGGAGAGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGT 40466 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || ||||| || || |||| || ||||| || || | ||| || | Sbjct 40465 CCGGAGGAATGCCCTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAG 40406 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| || ||||| || | ||||| ||||| || || || || Sbjct 40405 ATTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363 Score = 111 bits (122), Expect = 5e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || ||| ||| || || || ||||||||||| | ||||| ||||| || | Sbjct 41013 CAAG-TGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCCATCCTCCA 40955 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || |||||||| ||||| | || || || || || || || || || || || || | Sbjct 40954 ACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGGA 40895 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | || || |||||||| | ||| || | ||| ||||| | |||| ||||||| Sbjct 40894 TCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAATGGTCTTTC 40835 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| | || || || || |||||||| Sbjct 40834 CGGTCAAAGTCTTGACGAAGATCTGCAT 40807 Score = 100 bits (110), Expect = 9e-16 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || ||||| ||||||||||| ||||| || || | Sbjct 40300 TTTGCATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGT 40241 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || |||||||| || || || || ||||| | || || || | Sbjct 40240 AGTCGCTCAAGGTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGT 40181 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || |||||||| || |||||||| || || ||| || || || || || | || | | Sbjct 40180 CCGGGGGAATTCCCTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTC-GCT 40123 Query 140682 GG-TTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || || || | ||||| ||||| Sbjct 40122 GGACTCAACCTCGAGAGTGATGGTCTTGCCGGT 40090 >seq3023 Length=23922 Score = 131 bits (144), Expect = 5e-25 Identities = 220/317 (69%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 378183 ATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGT 378242 ||||||| | |||| | |||||| | || || | ||| || || ||||||||||| Sbjct 13668 ATCATATTTCGCCATAACATCTTCAAGAGCCTTGACAAGACGACGTTGGATATAACCAGT 13609 Query 378243 TTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAA 378302 || || || |||||||||||||| ||||| |||||||| |||| || |||||||| Sbjct 13608 TTCTGCGGTCTTGACTGCAGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAA 13549 Query 378303 TAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGG 378362 || ||||| || ||||| || | || | ||||| |||| | || ||||| | | || Sbjct 13548 GAACTCAGTGGGGGTAAGACCTCGAAGATATGAATTCTCGACGAAACCTCTCGATTCAGG 13489 Query 378363 CGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCG 378422 || | ||| | || || |||| || | || | | | ||| || | ||||| || Sbjct 13488 AGAGTAATCGTCCTTGGTGAAATGCGGCAGAGTTCTGTATTTAAAACCGAACGGAATACG 13429 Query 378423 TTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAGCAATATTTAAATC 378479 ||| || || ||| |||||||| |||| || || ||| || | |||||| | | Sbjct 13428 TTTACCCTCGACAGACTGTTGACCCACAAGCGCGGA---CATCTGGGAAATATTGATAGT 13372 Query 378480 ACTACCTTTAGACCCAG 378496 | |||||||| |||| Sbjct 13371 AGATCCTTTAGAACCAG 13355 >seq3366 Length=31922 Score = 93.3 bits (102), Expect = 1e-13 Identities = 235/357 (66%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| || || | ||| || | | ||||||||||||| | || ||| |||| || Sbjct 29652 CCAGAAGAGATCTCCGCCATGATTCTTGGTAAAATGAAGGAAGTCGCCGAATCATACTTG 29711 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || || | |||||| |||| || || ||||| || || || ||| | Sbjct 29712 GGAAAGAAGGTCACCCACGCTGTTGTTACAGTCCCGGCCTACTTCAACGACAACCAAAGA 29771 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 ||||| ||||| || || | ||||| || || | || || | || | || ||| Sbjct 29772 CAGGCAACCAAAGACGCCGGTACTATTGCCGGTTTGGAAGTCCTTCGTATCGTCAACGAA 29831 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || ||||| || || || || | || || || ||| |||| | || Sbjct 29832 CCCACCGCCGCAGCTATCGCCTACGGTTTGGACAA---GACTGAGGGAGAACGTCAAATC 29888 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | | ||| | ||||| || ||||| ||||| || || || | |||| || Sbjct 29889 ATTGTCTACGATCTTGGTGGAGGAACTTTCGATGTTTCCCTTCTCTCTATTGACCGTGGC 29948 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 |||| || ||| | || || ||||| || || | || ||||||||||| ||| Sbjct 29949 GTTTTCGAGGTTCTTTCTACCGCCGGTGACACTCACTTGGGAGGAGAAGATTTCGAT 30005 >seq68 Length=8748 Score = 84.2 bits (92), Expect = 7e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 202720 GAATAAATATTACTTGTAAATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTA 202779 || || || ||| ||| ||||||| ||||| |||||| ||| | ||| ||| |||| Sbjct 2757 GAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACCGAGAATCTGAGAGGTA 2816 Query 202780 CTAGCAGTTGGCATAGGTGCAACTAGTAAACTATTGCGAAGCCCATATTCTTTAAT 202835 || || ||||||||||| ||||| || ||||| ||||| | || |||| ||| || Sbjct 2817 CTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACCGTATTGTTTGAT 2872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515179169986625