Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq68 203 4e-47 seq485 118 1e-21 >seq68 Length=8748 Score = 203 bits (224), Expect = 4e-47 Identities = 678/1044 (65%), Gaps = 32/1044 (3%) Strand=Plus/Plus Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923 || ||| |||| || || || ||||| |||| |||||| || ||||| || | ||||| Sbjct 3095 CAAGAAAGCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATTGCT 3154 Query 78924 CTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGT 78983 ||||| ||| | | | ||||| |||| || |||| ||||| ||| | Sbjct 3155 CTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGAC 3214 Query 78984 GACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--TTGATG--- 79038 ||||| |||| ||||||| | || ||| || || || ||| || ||| Sbjct 3215 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAG--TTCCCTCGTTCATGTCC 3272 Query 79039 ---AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGA 79094 || || || || ||| | ||||||||||| || || || || || ||| Sbjct 3273 ACAAATGTTGGGAGAGCAATG-GATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGA 3331 Query 79095 AACCTCGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCTTCT 79150 |||| ||||||||||||| ||| || ||| |||||||||| |||||| | Sbjct 3332 GTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGA----ATGGTGCCGAGGTTCTTTT 3387 Query 79151 GGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCT 79210 |||||||||||| || || || |||||||| |||| | || | |||||||| | Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447 Query 79211 GACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTACCGA 79266 || || ||||| | || ||| | | |||| || || | | |||| Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTT 3507 Query 79267 CCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGG 79326 || | | | || || || | | | ||| | || || || ||||| | || Sbjct 3508 CCTTCT----CATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAAC 3563 Query 79327 CCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATG 79386 || ||||| |||| || |||||||| |||||| ||| ||| || || || ||| Sbjct 3564 CCAGGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATA 3623 Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 ||||| ||||| ||||||| || |||||| || ||| || | || || | || Sbjct 3624 AAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCG 3683 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 |||||| || || || ||||| || | | ||| |||||||| ||||| || ||||| Sbjct 3684 TGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATT 3743 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || || | ||| |||||| || ||||||| || || | || || ||||||||| Sbjct 3744 GCAAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAA 3803 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCG 79626 ||||| ||||| ||||| || || | || | || || || ||| || | ||| Sbjct 3804 ACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCA 3863 Query 79627 CTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGC 79685 | || || || | | | | || || |||||||| |||| ||||| || || Sbjct 3864 GTAGCACGGAT-TCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGC 3922 Query 79686 GCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAA 79745 ||| |||||| || ||||| || || ||||| || |||||||| | | ||||| Sbjct 3923 ACACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAA 3982 Query 79746 GCAGCTCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCG 79804 ||| || | || | |||| ||||| ||| ||| || || || | ||||| | Sbjct 3983 GCATGATGAAAGTTG-AGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGG 4041 Query 79805 TGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGT 79864 ||||| | || | | ||||| | ||| ||||| || | | | || ||||| |||| Sbjct 4042 TGAAGTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGT 4101 Query 79865 GGATGCCGACCGCGACGCGCATGA 79888 | || || || || || ||||||| Sbjct 4102 GAATACCAACGGCAACACGCATGA 4125 Score = 170 bits (188), Expect = 2e-37 Identities = 392/585 (67%), Gaps = 4/585 (1%) Strand=Plus/Minus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||| || || || || || || || ||||| || | | | | ||||| ||| Sbjct 4125 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGTGCCATTGAGACCTACA 4066 Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235 || ||||| | | || | |||||| ||||| | || || |||||| ||| ||||| Sbjct 4065 ACTTGATGTCCAATAAATACTTCACCCACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 4006 Query 19236 -ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 |||| | || | || || ||||| | | |||||||| || || || || || Sbjct 4005 CACAAGCT-CAACTTTCATCATGCTTCCTCATTGACATGAAGGAGGATAGTATCGATGGT 3947 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 || ||||| || |||||| ||| || || ||||| |||| || ||||| || Sbjct 3946 ATTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAAACGCCGGTGGCATCGGTCTC 3887 Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 || | | | | ||||| | | |||| | || || || || || || | Sbjct 3886 AACATTCACAGA-ATCCGTGCTACTGGTGCCTACATTGCCGGTACCAATGGTAACTCCAA 3828 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 ||||| || || ||||| || || |||||||| || || || || || ||||||| || Sbjct 3827 TGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCGAGATATGTTGACCAGGGTGG 3768 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 ||| || || | || || |||||||| ||||| |||||||| ||||| | || Sbjct 3767 AAACAAGCGTCCTGGTGCATTTGCAATCTACCTTGAGCCTTGGCACGCAGACGTTTTCGA 3708 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 || || || || || |||||| ||| | || || | ||| || || |||||| Sbjct 3707 GTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAGTCCGCGCCCGTGATCTCTTCTA 3648 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 || |||||||||||||| || || ||| || || || ||| ||| ||| ||| || Sbjct 3647 CGCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCGAAAAGAACGGAGACTGGACACT 3588 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 |||||| || ||||||||||||| | | || || |||||||| Sbjct 3587 GATGTGTCCCAACGAATGCCCTGGGTTGGCTGATGTATACGGCGA 3543 >seq485 Length=41282 Score = 118 bits (130), Expect = 1e-21 Identities = 311/462 (67%), Gaps = 32/462 (7%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 || || ||||| || | |||||||| ||| || |||||||| |||||| ||| || || Sbjct 7000 TTCGCTCAACGCCTAGTTGCTTTTGC-TGCTGTTGAAGGAATTTTCTTCAGTGGATCATT 7058 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | |||| ||||||||||| || |||||| | ||| | || || | ||||||||| || Sbjct 7059 CGCCTCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 7118 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT 60151 ||| || ||||| ||||| || || || || || ||| || | | || ||| | || Sbjct 7119 GCTCATCTCCCGTGACGAAGGTCTTCACACCGACTTCGCA-TGCCTC-CTTTTCTC-CCA 7175 Query 60152 ATTGGAAAAATGCCCTTCCAAGGA-TATTCACAAGAT-TGTTCAGTG-GGCTTGTGAAGT 60208 ||| | | |||| |||| | | |||||| | ||| | |||| ||| | Sbjct 7176 CTTGAAGCACCGCCCAAGCAAGCAGGCTGTCCAAGATGTCATCACCGAGGCTGTTGAGAT 7235 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 || |||||| | || || || ||||||||| || | || ||| || | || Sbjct 7236 TGAACAAGAGTTCTTGACTGAGGCTCTTCCATGCGCGCTTCTTGGCATGAACTC----GA 7291 Query 60269 A----ATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGCCC--AGTTTGG 60319 | |||| ||| ||||| |||| ||||| ||||| |||| | || | || | Sbjct 7292 ACTTGATGAAGCAATACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGCTCTTGGTAACG 7351 Query 60320 AGAAGG---ACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTT 60376 | |||| || ||| | | ||||| ||||||| ||||||| |||||| | Sbjct 7352 ACAAGGTGTACAAATCTGC--------CAACCCCTTCGACTTCATGGAGAACATCTCCCT 7403 Query 60377 GGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | ||| ||||| |||||||| |||||| | ||||| || || Sbjct 7404 AGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTCGGTGACTA 7445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548498230830000