Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq68 217 2e-51 seq3694 84.2 2e-11 >seq68 Length=8748 Score = 217 bits (240), Expect = 2e-51 Identities = 391/565 (69%), Gaps = 6/565 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | ||||| ||||||||||| | | ||| | |||||| ||| Sbjct 4125 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGTGCCATTGAGACCTACA 4066 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | | || ||||| || |||||| | || || || ||| ||||||||| Sbjct 4065 ACTTGATGTCCAATAAATACTTCACCCACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 4006 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || |||| | || |||||||| | | |||||||| || ||||| || | Sbjct 4005 CACAAGCTCAACTTTCATCATGCTTCCTCATTGACATGAAGGAGGATAGTATCGATGGTA 3946 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | ||||| || |||||| |||||| || ||||| | ||||| |||||| || Sbjct 3945 TTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAAACGCCGGTGGCATCGGTCTCA 3886 Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | | | ||| ||||||| | || | || || || || || | || | Sbjct 3885 ACATTCACAGAA--TCCGTGCTACTGGTGCCTACATTGCCGGTACCAATGGTAACTCCAA 3828 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| || ||||||||||| || || |||||||| || || | || || |||||||||| Sbjct 3827 TGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCGAGATATGTTGACCAGGGTGG 3768 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | || || |||||||| ||||| |||||||| ||| || | || Sbjct 3767 AAACAAGCGTCCTGGTGCATTTGCAATCTACCTTGAGCCTTGGCACGCAGACGTTTTCGA 3708 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TA 53669 |||||| || || || ||| || ||| | ||||| | ||| |||||| || || || Sbjct 3707 GTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAGTCCGCGCCCGTGATCTCTTCTA 3648 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 | ||| ||||||||||||| ||||| ||| | || || ||| ||| || ||| | Sbjct 3647 C-GCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCGAAAAGAACGGAGACTGGACAC 3589 Query 53730 TGATGTGCCCGAACGAGTGCCCCGG 53754 ||||||| || ||||| ||||| || Sbjct 3588 TGATGTGTCCCAACGAATGCCCTGG 3564 >seq3694 Length=35177 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 118166 ATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCA 118225 |||| ||| || ||||||||| || |||||| || || || ||||| |||| ||| Sbjct 26130 ATGGAGGCATCACGAACGTTGAGCATCTTACCACGAAGAGGGAACACTCCAATACGGTCC 26071 Query 118226 CGGCCCACAAC-GCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAAT 118284 | ||| ||| |||| ||| || | |||||| || |||| ||||||||||| || | Sbjct 26070 GGATCCAAAACTGCTCG-GCCAGCCACAGCAAGACCCATCGCAGAGTCACCCTCAGTCAA 26012 Query 118285 AATAAGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTTCGG 118344 ||| | || |||||| | || | ||||| ||| | || |||||| | || ||||| Sbjct 26011 AATCAAGGTACACTCGTGCCCACGTTTTGTACCAGCCAAGTTTGCATCAACAAGTTTCGG 25952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189494225000