Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq68 217 2e-51
seq3694 84.2 2e-11
>seq68
Length=8748
Score = 217 bits (240), Expect = 2e-51
Identities = 391/565 (69%), Gaps = 6/565 (1%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || ||| | ||||| ||||||||||| | | ||| | |||||| |||
Sbjct 4125 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGTGCCATTGAGACCTACA 4066
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|||| ||| | | || ||||| || |||||| | || || || ||| |||||||||
Sbjct 4065 ACTTGATGTCCAATAAATACTTCACCCACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 4006
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| |||| | || |||||||| | | |||||||| || ||||| || |
Sbjct 4005 CACAAGCTCAACTTTCATCATGCTTCCTCATTGACATGAAGGAGGATAGTATCGATGGTA 3946
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
| ||||| || |||||| |||||| || ||||| | ||||| |||||| ||
Sbjct 3945 TTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAAACGCCGGTGGCATCGGTCTCA 3886
Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| | | | ||| ||||||| | || | || || || || || | || |
Sbjct 3885 ACATTCACAGAA--TCCGTGCTACTGGTGCCTACATTGCCGGTACCAATGGTAACTCCAA 3828
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
||| || ||||||||||| || || |||||||| || || | || || ||||||||||
Sbjct 3827 TGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCGAGATATGTTGACCAGGGTGG 3768
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | || || |||||||| ||||| |||||||| ||| || | ||
Sbjct 3767 AAACAAGCGTCCTGGTGCATTTGCAATCTACCTTGAGCCTTGGCACGCAGACGTTTTCGA 3708
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TA 53669
|||||| || || || ||| || ||| | ||||| | ||| |||||| || || ||
Sbjct 3707 GTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAGTCCGCGCCCGTGATCTCTTCTA 3648
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
| ||| ||||||||||||| ||||| ||| | || || ||| ||| || ||| |
Sbjct 3647 C-GCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCGAAAAGAACGGAGACTGGACAC 3589
Query 53730 TGATGTGCCCGAACGAGTGCCCCGG 53754
||||||| || ||||| ||||| ||
Sbjct 3588 TGATGTGTCCCAACGAATGCCCTGG 3564
>seq3694
Length=35177
Score = 84.2 bits (92), Expect = 2e-11
Identities = 128/180 (71%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 118166 ATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCA 118225
|||| ||| || ||||||||| || |||||| || || || ||||| |||| |||
Sbjct 26130 ATGGAGGCATCACGAACGTTGAGCATCTTACCACGAAGAGGGAACACTCCAATACGGTCC 26071
Query 118226 CGGCCCACAAC-GCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAAT 118284
| ||| ||| |||| ||| || | |||||| || |||| ||||||||||| || |
Sbjct 26070 GGATCCAAAACTGCTCG-GCCAGCCACAGCAAGACCCATCGCAGAGTCACCCTCAGTCAA 26012
Query 118285 AATAAGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTTCGG 118344
||| | || |||||| | || | ||||| ||| | || |||||| | || |||||
Sbjct 26011 AATCAAGGTACACTCGTGCCCACGTTTTGTACCAGCCAAGTTTGCATCAACAAGTTTCGG 25952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547189494225000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |