Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 176 5e-39
seq68 172 6e-38
seq3755 168 8e-37
seq542 149 7e-31
seq485 111 2e-19
>seq3721
Length=43933
Score = 176 bits (194), Expect = 5e-39
Identities = 168/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||||||||| || ||||||||||| || || |||| ||| |
Sbjct 40363 GTCAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGAC 40422
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| |||| || || || |||||||| |||||||| |||||||| ||||| |||
Sbjct 40423 AATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGATT 40482
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| || ||||| |||||||| || | || ||||| | ||||| || |||||||||||
Sbjct 40483 TTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAA 40542
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||||||| | || | |||||||| |||||
Sbjct 40543 TCTACTCTTCACTTGGTGCTCCGTCTTCGTGGTGG 40577
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| |||||||| ||||| || || | |||||||||||
Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | ||||| || || |||||||| || || || ||||||
Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || |||||||||||||| |||||||||| ||||| ||| | ||||| ||
Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| || || || || || | || | ||||| || |||||
Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGTTCTTCGTCTCCGTGGTGG 40805
Score = 143 bits (158), Expect = 3e-29
Identities = 157/206 (76%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487
||||||||||||| || ||||| ||||||||||| | || | ||| | || | |||
Sbjct 40088 TTACCGGCAAGACCATCACTCTCGAGGTTGAGTCCAGCGACACCATCGACAACGTCAAGA 40147
Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
|| || ||||| |||||||||||||| || ||||| ||||| | || || || || |
Sbjct 40148 GCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCA 40207
Query 27548 AGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
|||| || || || | ||||||| | ||| ||||| || |||||||||| || |||||
Sbjct 40208 AGCAGCTTGAAGACGGTCGTACCTTGAGC-GACTACAACATCCAAAAGGAGTCTACTCTC 40266
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| ||| | |||||||| || ||
Sbjct 40267 CATCTCGTCCTCCGTCTTCGTGGCGG 40292
Score = 102 bits (112), Expect = 9e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||| ||||| ||||| | || || || ||
Sbjct 40807 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACGTTGGAAGTGGAATCTTCG 40866
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || | ||| | || || || ||||||||||| || || || |||||
Sbjct 40867 GATACCATTGATAACGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAA 40926
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || ||||| ||||| | ||||||| | || || | || |||||
Sbjct 40927 CAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGATGGCAGAACACTGTCTGATTATAAC 40986
Query 27586 GTCCAAAAGGA 27596
|||| |||||
Sbjct 40987 ATCCAGAAGGA 40997
>seq68
Length=8748
Score = 172 bits (190), Expect = 6e-38
Identities = 665/1033 (64%), Gaps = 25/1033 (2%)
Strand=Plus/Plus
Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC-GGC 80783
||||| || || || || |||| ||||| || ||||| || || | || || |||
Sbjct 3105 TCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT-GCTCTTTCTGGC 3163
Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843
|| | | ||||| |||| | || |||| ||||| ||| | ||| || |
Sbjct 3164 TTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAACGACTTG 3223
Query 80844 TGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGG 80897
||||| || ||||| || || |||||| | | |||| | |||||||| ||
Sbjct 3224 AGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAAATGTTGG 3283
Query 80898 AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGAT 80957
|| | ||| ||||| || || || || || || | | | | ||||| ||
Sbjct 3284 GAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATTCGACAAT 3343
Query 80958 TTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTT 81017
||| ||||||| ||| || ||| || || ||||| || ||||| ||| ||
Sbjct 3344 TTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTATT 3403
Query 81018 GCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGC 81077
||| || |||||||| |||| | ||| | ||||||||| || | || ||| ||||
Sbjct 3404 GCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGGA 3463
Query 81078 GTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137
|| ||||| || | || |||| ||||| | | ||||| | |||| | |
Sbjct 3464 GTACCAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTTCCTTCTCATAACTCTC 3523
Query 81138 GTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGG 81194
|| ||||||| || | | |||| | |||| | | ||||| ||||| ||
Sbjct 3524 ATAGAGAGCTTCG---AATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGG 3580
Query 81195 GCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCG-TCAGGGATCC 81253
|||||||| |||||| || || || ||| |||||| |||| | || || ||||
Sbjct 3581 ACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCAT-AAAGAGATCCGGAATCC 3639
Query 81254 AGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACT 81313
| | ||| ||| || || ||| ||| | || || | ||| ||||| || | |
Sbjct 3640 ACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGT 3699
Query 81314 CGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGC 81373
| ||||| || | | ||| || ||||| ||||| || || | || | | || |
Sbjct 3700 CCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGAC 3759
Query 81374 GACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGA 81430
| | |||||||||| || || | ||||| ||| || || || | |||||| |
Sbjct 3760 GCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCA 3819
Query 81431 TGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGC 81490
||||||| || | ||| || ||||| | || | || | || || | ||
Sbjct 3820 CAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTG- 3878
Query 81491 TGATTGAA-AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTC 81549
||| || |||||||||||||| | || |||||| ||||||| || | |||
Sbjct 3879 TGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTGAGGGTA 3938
Query 81550 TCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGA 81609
|| ||||| || ||||| ||||| | |||||||||| | ||| || ||| | |||
Sbjct 3939 TCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGA 3998
Query 81610 GGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTG 81667
| ||| | | | || || ||| ||||| |||| ||||| |||| || || |
Sbjct 3999 G--CTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTATTGG 4056
Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727
|||||| || ||||| || || | | |||||||||||||||||||| | || |
Sbjct 4057 ACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAATACCAACGGCAA 4116
Query 81728 CACGCATAAACAT 81740
||||||| | |||
Sbjct 4117 CACGCATGATCAT 4129
>seq3755
Length=35748
Score = 168 bits (186), Expect = 8e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || || || || || || || |||||||| || |
Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||| | || || |||||||||||||||||||| || || ||
Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || || || ||||||||||| |||| || ||||| | ||||| ||
Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|||||||||| ||||||||||| | ||| | ||||| || ||||||
Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGGA 18288
>seq542
Length=29042
Score = 149 bits (164), Expect = 7e-31
Identities = 142/182 (78%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| ||||| || |||||||| || |||||||| ||||| |||| |||
Sbjct 10069 CTTCGTCAAGACCCTTACGGGAAAGACTATCACCCTTGAGGTGGAGTCTTCCGATACCAT 10128
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
|| ||| | ||| | || || |||||||||||||||||||| || || || || ||| |
Sbjct 10129 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAACAACGTTT 10188
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || || || |||||||| ||||||| || ||||| ||||||| || |||||||
Sbjct 10189 GATCTTCGCCGGAAAGCAACTTGAGGATGGACGAACCCTTTCAGACTACAACATCCAAAA 10248
Query 27594 GG 27595
||
Sbjct 10249 GG 10250
>seq485
Length=41282
Score = 111 bits (122), Expect = 2e-19
Identities = 295/448 (66%), Gaps = 12/448 (3%)
Strand=Plus/Plus
Query 64713 TCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTC 64772
||| || || | |||||||| ||| |||||||||||||| ||| |||||| ||
Sbjct 7005 TCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATTCGCCTC 7064
Query 64773 TATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832
||| |||||||| || || || ||| ||||| | ||||| | || || || ||||| ||
Sbjct 7065 TATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCAT 7124
Query 64833 CTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGA 64892
||| || ||||| || || ||| || || || ||| ||| |||| | ||| |
Sbjct 7125 CTCCCGTGACGAAGGTCTTCACACCGACTTCGCATGCCTCCTTTTCTCCCACTTGAAGCA 7184
Query 64893 CAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGA 64952
| ||| | | || | ||| | | | |||||| || |||||| | ||
Sbjct 7185 CCGCCCAAGCAAGCAGGCTGTCCAAGATGTCATCACCGAGGCTGTTGAGATTGAACAAGA 7244
Query 64953 ATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACA 65012
||| | |||| || ||||| || || | |||||| | | | |||||| ||
Sbjct 7245 GTTCTTGACTGAGGCTCTTCCATGCGCGCTTCTTGGCATGAACTCGAACTTGATGAAGCA 7304
Query 65013 GTATATCGAATTTGTAGCAGA---TCGCCTGCTTACTCAGTTTGGTA---TTAAGCCCTA 65066
|| ||||| || || ||||| || ||| || ||| |||||| ||| ||
Sbjct 7305 ATACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGCTC---TTGGTAACGACAAGGTGTA 7361
Query 65067 CTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAA 65126
| || ||| | || || || |||| ||||||| ||| ||| | || ||||| ||
Sbjct 7362 C---AAATCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACAAA 7418
Query 65127 CTTTTTTGAAAAGAGGGTAGGTGATTAC 65154
||| || || ||||| || ||||| |||
Sbjct 7419 CTTCTTCGAGAAGAGAGTCGGTGACTAC 7446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570282775590000
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