Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3721 176 5e-39 seq68 172 6e-38 seq3755 168 8e-37 seq542 149 7e-31 seq485 111 2e-19 >seq3721 Length=43933 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || ||||||||||| || || |||| ||| | Sbjct 40363 GTCAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGAC 40422 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| |||| || || || |||||||| |||||||| |||||||| ||||| ||| Sbjct 40423 AATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGATT 40482 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || ||||| |||||||| || | || ||||| | ||||| || ||||||||||| Sbjct 40483 TTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAA 40542 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||| | || | |||||||| ||||| Sbjct 40543 TCTACTCTTCACTTGGTGCTCCGTCTTCGTGGTGG 40577 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| |||||||| ||||| || || | ||||||||||| Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | ||||| || || |||||||| || || || |||||| Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||||||||| |||||||||| ||||| ||| | ||||| || Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || || || || || | || | ||||| || ||||| Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGTTCTTCGTCTCCGTGGTGG 40805 Score = 143 bits (158), Expect = 3e-29 Identities = 157/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||||||||| || ||||| ||||||||||| | || | ||| | || | ||| Sbjct 40088 TTACCGGCAAGACCATCACTCTCGAGGTTGAGTCCAGCGACACCATCGACAACGTCAAGA 40147 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 || || ||||| |||||||||||||| || ||||| ||||| | || || || || | Sbjct 40148 GCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCA 40207 Query 27548 AGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 |||| || || || | ||||||| | ||| ||||| || |||||||||| || ||||| Sbjct 40208 AGCAGCTTGAAGACGGTCGTACCTTGAGC-GACTACAACATCCAAAAGGAGTCTACTCTC 40266 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||| | |||||||| || || Sbjct 40267 CATCTCGTCCTCCGTCTTCGTGGCGG 40292 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| ||||| | || || || || Sbjct 40807 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACGTTGGAAGTGGAATCTTCG 40866 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||| | || || || ||||||||||| || || || ||||| Sbjct 40867 GATACCATTGATAACGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAA 40926 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| | ||||||| | || || | || ||||| Sbjct 40927 CAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGATGGCAGAACACTGTCTGATTATAAC 40986 Query 27586 GTCCAAAAGGA 27596 |||| ||||| Sbjct 40987 ATCCAGAAGGA 40997 >seq68 Length=8748 Score = 172 bits (190), Expect = 6e-38 Identities = 665/1033 (64%), Gaps = 25/1033 (2%) Strand=Plus/Plus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC-GGC 80783 ||||| || || || || |||| ||||| || ||||| || || | || || ||| Sbjct 3105 TCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT-GCTCTTTCTGGC 3163 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 || | | ||||| |||| | || |||| ||||| ||| | ||| || | Sbjct 3164 TTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAACGACTTG 3223 Query 80844 TGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGG 80897 ||||| || ||||| || || |||||| | | |||| | |||||||| || Sbjct 3224 AGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAAATGTTGG 3283 Query 80898 AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGAT 80957 || | ||| ||||| || || || || || || | | | | ||||| || Sbjct 3284 GAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATTCGACAAT 3343 Query 80958 TTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTT 81017 ||| ||||||| ||| || ||| || || ||||| || ||||| ||| || Sbjct 3344 TTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTATT 3403 Query 81018 GCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGC 81077 ||| || |||||||| |||| | ||| | ||||||||| || | || ||| |||| Sbjct 3404 GCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGGA 3463 Query 81078 GTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 || ||||| || | || |||| ||||| | | ||||| | |||| | | Sbjct 3464 GTACCAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTTCCTTCTCATAACTCTC 3523 Query 81138 GTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGG 81194 || ||||||| || | | |||| | |||| | | ||||| ||||| || Sbjct 3524 ATAGAGAGCTTCG---AATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGG 3580 Query 81195 GCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCG-TCAGGGATCC 81253 |||||||| |||||| || || || ||| |||||| |||| | || || |||| Sbjct 3581 ACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCAT-AAAGAGATCCGGAATCC 3639 Query 81254 AGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACT 81313 | | ||| ||| || || ||| ||| | || || | ||| ||||| || | | Sbjct 3640 ACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGT 3699 Query 81314 CGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGC 81373 | ||||| || | | ||| || ||||| ||||| || || | || | | || | Sbjct 3700 CCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGAC 3759 Query 81374 GACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGA 81430 | | |||||||||| || || | ||||| ||| || || || | |||||| | Sbjct 3760 GCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCA 3819 Query 81431 TGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGC 81490 ||||||| || | ||| || ||||| | || | || | || || | || Sbjct 3820 CAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTG- 3878 Query 81491 TGATTGAA-AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTC 81549 ||| || |||||||||||||| | || |||||| ||||||| || | ||| Sbjct 3879 TGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTGAGGGTA 3938 Query 81550 TCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGA 81609 || ||||| || ||||| ||||| | |||||||||| | ||| || ||| | ||| Sbjct 3939 TCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGA 3998 Query 81610 GGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTG 81667 | ||| | | | || || ||| ||||| |||| ||||| |||| || || | Sbjct 3999 G--CTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTATTGG 4056 Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727 |||||| || ||||| || || | | |||||||||||||||||||| | || | Sbjct 4057 ACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAATACCAACGGCAA 4116 Query 81728 CACGCATAAACAT 81740 ||||||| | ||| Sbjct 4117 CACGCATGATCAT 4129 >seq3755 Length=35748 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || || || || || || |||||||| || | Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||| | || || |||||||||||||||||||| || || || Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || || || ||||||||||| |||| || ||||| | ||||| || Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| ||||||||||| | ||| | ||||| || |||||| Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGGA 18288 >seq542 Length=29042 Score = 149 bits (164), Expect = 7e-31 Identities = 142/182 (78%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| ||||| || |||||||| || |||||||| ||||| |||| ||| Sbjct 10069 CTTCGTCAAGACCCTTACGGGAAAGACTATCACCCTTGAGGTGGAGTCTTCCGATACCAT 10128 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| | || || |||||||||||||||||||| || || || || ||| | Sbjct 10129 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAACAACGTTT 10188 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || |||||||| ||||||| || ||||| ||||||| || ||||||| Sbjct 10189 GATCTTCGCCGGAAAGCAACTTGAGGATGGACGAACCCTTTCAGACTACAACATCCAAAA 10248 Query 27594 GG 27595 || Sbjct 10249 GG 10250 >seq485 Length=41282 Score = 111 bits (122), Expect = 2e-19 Identities = 295/448 (66%), Gaps = 12/448 (3%) Strand=Plus/Plus Query 64713 TCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTC 64772 ||| || || | |||||||| ||| |||||||||||||| ||| |||||| || Sbjct 7005 TCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATTCGCCTC 7064 Query 64773 TATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832 ||| |||||||| || || || ||| ||||| | ||||| | || || || ||||| || Sbjct 7065 TATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCAT 7124 Query 64833 CTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGA 64892 ||| || ||||| || || ||| || || || ||| ||| |||| | ||| | Sbjct 7125 CTCCCGTGACGAAGGTCTTCACACCGACTTCGCATGCCTCCTTTTCTCCCACTTGAAGCA 7184 Query 64893 CAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGA 64952 | ||| | | || | ||| | | | |||||| || |||||| | || Sbjct 7185 CCGCCCAAGCAAGCAGGCTGTCCAAGATGTCATCACCGAGGCTGTTGAGATTGAACAAGA 7244 Query 64953 ATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACA 65012 ||| | |||| || ||||| || || | |||||| | | | |||||| || Sbjct 7245 GTTCTTGACTGAGGCTCTTCCATGCGCGCTTCTTGGCATGAACTCGAACTTGATGAAGCA 7304 Query 65013 GTATATCGAATTTGTAGCAGA---TCGCCTGCTTACTCAGTTTGGTA---TTAAGCCCTA 65066 || ||||| || || ||||| || ||| || ||| |||||| ||| || Sbjct 7305 ATACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGCTC---TTGGTAACGACAAGGTGTA 7361 Query 65067 CTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAA 65126 | || ||| | || || || |||| ||||||| ||| ||| | || ||||| || Sbjct 7362 C---AAATCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACAAA 7418 Query 65127 CTTTTTTGAAAAGAGGGTAGGTGATTAC 65154 ||| || || ||||| || ||||| ||| Sbjct 7419 CTTCTTCGAGAAGAGAGTCGGTGACTAC 7446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570282775590000