Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3721 125 4e-24 seq3755 102 5e-17 seq542 96.9 2e-15 >seq3721 Length=43933 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | |||||| || || || |||||||| || ||||||||||| || Sbjct 41033 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGAC 40974 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | || || | || || || || || || || |||||||||||||| || Sbjct 40973 AGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGG 40914 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| |||| || ||| || ||| || || ||||| Sbjct 40913 ATACCCTCCTTGTCTTGGATC-TTTGACTTGACGTTATCAATGGTATCCGAAGATTCCAC 40855 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || ||||| || || || || || |||||||| Sbjct 40854 TTCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807 Score = 109 bits (120), Expect = 3e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || ||||| |||||||| ||||| || || || Sbjct 40577 CCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 40518 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| |||||||||||||| || || | ||| || |||||||| || Sbjct 40517 AGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGA 40458 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||| ||| |||||| Sbjct 40457 ATGCCCTCCTTATCTTGGATCTT 40435 Score = 91.5 bits (100), Expect = 9e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | ||||||||| ||||||||| ||||| || || Sbjct 40292 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 40233 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||||||||| || || || || || || || |||||||||||||| || Sbjct 40232 AAGGTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 40173 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||| || |||||| Sbjct 40172 ATTCCCTCCTTATCCTGGATCTT 40150 >seq3755 Length=35748 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || |||||| ||||||||| ||||| || || ||||| || || Sbjct 18298 AGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGT 18357 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || || ||||| ||||| || || || | ||||||| Sbjct 18358 CCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCC 18417 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 18418 TTGTCCTGGATCTT 18431 >seq542 Length=29042 Score = 96.9 bits (106), Expect = 2e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| ||||| || |||||||| ||||| | || |||||||| || ||||| || | Sbjct 10250 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGA 10191 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 | ||||| ||||| ||||| || | |||||||||||| |||||| Sbjct 10190 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTT 10145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314714736402875