Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 114 1e-20
seq3721 86.0 5e-12
>seq3755
Length=35748
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || || || || || | || || || || || ||| | ||
Sbjct 18516 CATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTC 18457
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | || || | ||||| || || || ||||| || || || || || |||||
Sbjct 18456 TGATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCA 18397
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| ||||| || | ||||||||| ||| | ||||| | ||| ||||||| |||||
Sbjct 18396 ACAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 18337
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||| ||||||||||| || | || ||||| | ||| | || |||||
Sbjct 18336 CATCCAAAAGGAGTCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGG 18289
>seq3721
Length=43933
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || ||||| ||| | || || | || || || ||||
Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || ||||| ||||| || || || || ||||| || ||
Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||| | || | || || || || | || || | || | ||||| ||||||
Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||| |||||||| | || |||||| | ||| | || ||||| ||
Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGTTCTTCGTCTCCGTGGTGGTAT 40808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434897333640000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |