Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3755 114 1e-20 seq3721 86.0 5e-12 >seq3755 Length=35748 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || || | || || || || || ||| | || Sbjct 18516 CATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTC 18457 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | ||||| || || || ||||| || || || || || ||||| Sbjct 18456 TGATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCA 18397 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | ||||||||| ||| | ||||| | ||| ||||||| ||||| Sbjct 18396 ACAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 18337 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||||||||| || | || ||||| | ||| | || ||||| Sbjct 18336 CATCCAAAAGGAGTCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGG 18289 >seq3721 Length=43933 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || | || || || |||| Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| ||||| || || || || ||||| || || Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || || | || || | || | ||||| |||||| Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| |||||||| | || |||||| | ||| | || ||||| || Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGTTCTTCGTCTCCGTGGTGGTAT 40808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434897333640000