Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 212 1e-49
seq3721 167 5e-36
seq542 138 3e-27
>seq3755
Length=35748
Score = 212 bits (234), Expect = 1e-49
Identities = 174/212 (82%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||||||||||||||| ||||||||||| || || | |||||| | |||||||
Sbjct 18304 AGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 18363
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| | |||||||| ||||| |||| ||| |||||||||
Sbjct 18364 TCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCC 18423
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || |||||||| |||||| |||||||||||| ||||| ||
Sbjct 18424 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 18483
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || || | ||||||
Sbjct 18484 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515
>seq3721
Length=43933
Score = 167 bits (184), Expect = 5e-36
Identities = 158/199 (79%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
|||||| | ||||| || || ||||| ||||| ||||||||||| || || | |||||
Sbjct 40287 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGG- 40229
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
| | || ||||| |||||||||||||||||||| | ||| |||||||| || |||| ||
Sbjct 40228 TACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTC 40169
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||| ||||||||||| || ||||| ||||||||||| | ||||||||||
Sbjct 40168 CCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTGGACTCAACCTCGA 40109
Query 211072 GAGTGATCGTCTTTCCCGT 211090
||||||| ||||| || ||
Sbjct 40108 GAGTGATGGTCTTGCCGGT 40090
Score = 149 bits (164), Expect = 1e-30
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||||||||| || || ||||||||||| || || | |||||
Sbjct 40572 ACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGT 40513
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||| || || || || ||||| || || ||||| ||||| ||||||| ||
Sbjct 40512 TCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCC 40453
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| || |||||||| || || || |||||||| || || ||| ||||| ||
Sbjct 40452 CTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAG 40393
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||| ||||| || ||||||||||| ||
Sbjct 40392 AGTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || ||||||||||| ||||| || || | || || | |||||
Sbjct 40790 AGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCC 40731
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || |||||||| ||||| ||||| || || | || ||||| ||
Sbjct 40730 TCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 40671
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || || || || ||||||||||| || |||||||| | ||||| |||
Sbjct 40670 TGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTC 40611
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || ||||| || || | |||||
Sbjct 40610 TTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Score = 131 bits (144), Expect = 4e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982
||| || |||||||||||||| | || || || ||||| |||| |||||| || |||||
Sbjct 40998 CTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAA 40939
Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042
||| | || |||||||| || || | || |||||||| ||||||||| || |||||
Sbjct 40938 GATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTTTGACTTGACGTT 40879
Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|| ||||| || || ||| || || | || || |||||||| || | |||||| ||
Sbjct 40878 ATCAATGGTATCCGAAGATTCCACTTCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGAC 40819
Query 211103 AAACACCTGCAT 211114
|| | ||||||
Sbjct 40818 GAAGATCTGCAT 40807
>seq542
Length=29042
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| || || | |||||| | |||||| || || ||||| || ||||||||
Sbjct 10248 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATC 10189
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| |||||||| || || |||| ||| ||||||||||||||||| || || || ||
Sbjct 10188 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 10129
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
||||| || || || ||||| || ||||| ||||||||||| || ||||| || ||
Sbjct 10128 ATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACGAA 10070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159094449914375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |