Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3755 212 1e-49 seq3721 167 5e-36 seq542 138 3e-27 >seq3755 Length=35748 Score = 212 bits (234), Expect = 1e-49 Identities = 174/212 (82%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||||||||| ||||||||||| || || | |||||| | ||||||| Sbjct 18304 AGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 18363 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| | |||||||| ||||| |||| ||| ||||||||| Sbjct 18364 TCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCC 18423 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| |||||| |||||||||||| ||||| || Sbjct 18424 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 18483 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 18484 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515 >seq3721 Length=43933 Score = 167 bits (184), Expect = 5e-36 Identities = 158/199 (79%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| || || ||||| ||||| ||||||||||| || || | ||||| Sbjct 40287 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGG- 40229 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||| |||||||||||||||||||| | ||| |||||||| || |||| || Sbjct 40228 TACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTC 40169 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||| ||||||||||| || ||||| ||||||||||| | |||||||||| Sbjct 40168 CCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTGGACTCAACCTCGA 40109 Query 211072 GAGTGATCGTCTTTCCCGT 211090 ||||||| ||||| || || Sbjct 40108 GAGTGATGGTCTTGCCGGT 40090 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||||||| || || ||||||||||| || || | ||||| Sbjct 40572 ACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGT 40513 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| || || || || ||||| || || ||||| ||||| ||||||| || Sbjct 40512 TCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCC 40453 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || |||||||| || || || |||||||| || || ||| ||||| || Sbjct 40452 CTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAG 40393 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||| ||||| || ||||||||||| || Sbjct 40392 AGTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||||||||| ||||| || || | || || | ||||| Sbjct 40790 AGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCC 40731 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || |||||||| ||||| ||||| || || | || ||||| || Sbjct 40730 TCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 40671 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || ||||||||||| || |||||||| | ||||| ||| Sbjct 40670 TGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTC 40611 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | ||||| Sbjct 40610 TTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 ||| || |||||||||||||| | || || || ||||| |||| |||||| || ||||| Sbjct 40998 CTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAA 40939 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 ||| | || |||||||| || || | || |||||||| ||||||||| || ||||| Sbjct 40938 GATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTTTGACTTGACGTT 40879 Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || ||||| || || ||| || || | || || |||||||| || | |||||| || Sbjct 40878 ATCAATGGTATCCGAAGATTCCACTTCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGAC 40819 Query 211103 AAACACCTGCAT 211114 || | |||||| Sbjct 40818 GAAGATCTGCAT 40807 >seq542 Length=29042 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| || || | |||||| | |||||| || || ||||| || |||||||| Sbjct 10248 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATC 10189 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | |||||||| || || |||| ||| ||||||||||||||||| || || || || Sbjct 10188 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 10129 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || || ||||| || ||||| ||||||||||| || ||||| || || Sbjct 10128 ATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACGAA 10070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159094449914375