Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 129 4e-25
seq3721 91.5 1e-13
>seq3755
Length=35748
Score = 129 bits (142), Expect = 4e-25
Identities = 149/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||| ||| |
Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || || ||||| || || | || || |||||
Sbjct 18455 GATACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCA 18397
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| || || |||||||| ||||| ||||| | |||||| | ||| |||||
Sbjct 18396 ACAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 18337
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| ||||||||
Sbjct 18336 CATCCAAAAGGAGTCCAC 18319
>seq3721
Length=43933
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||||| || ||||| || ||||| | || ||||| || |
Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | |||| ||||| || || || ||| | || || || ||
Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || ||||| || || || || || || | || ||| || ||| ||||||
Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||||||||| ||| | || || |||
Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGTT 40788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337993636968500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |