Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq68 275 9e-69
>seq68
Length=8748
Score = 275 bits (304), Expect = 9e-69
Identities = 1155/1794 (64%), Gaps = 46/1794 (3%)
Strand=Plus/Plus
Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828
||||| ||| | || || ||||| || | ||||| | | ||||| || ||||||||
Sbjct 2369 TTCTTGATCGACGGTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACAT 2428
Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888
|| || || ||||| || |||| ||| ||||||||| || | ||| |
Sbjct 2429 TCCGGTCTTGAGACCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGT 2488
Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948
|| || |||||||| ||||| || || ||||| | |||||| || | |||||
Sbjct 2489 GGGGTCTTTCATATGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGC 2548
Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008
||||||| | ||| || ||| | ||| ||||| | || ||| ||| | |||||
Sbjct 2549 GGCCATTTGAACAATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGAT 2608
Query 77009 ATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065
||| |||||| ||| | | || || || ||||| || || | || || |||||
Sbjct 2609 GTCAGCTGGAATGTTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTT 2668
Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125
|| | || ||||||| | | || | | | | || || || ||||| |
Sbjct 2669 CATGTTGTCTGACCACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGAC 2728
Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185
||| ||||| || | || || | ||||| ||| || ||| || |||||||| | | |
Sbjct 2729 TTGGAATTCCCCTGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACA 2788
Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245
||||| || | ||| |||| ||| || ||||||||||| || || | |||||
Sbjct 2789 CTCATTAAAACCGAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACT 2848
Query 77246 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304
|| | || ||| | | | |||| | |||| || ||| ||| |||||||| || |
Sbjct 2849 GTTGCGGACACCGTATTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 2907
Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTC-CGTTACTAG-CATATGATCCATT 77362
|||| || |||| | ||||||||| || ||| | || || || ||| || |
Sbjct 2908 TAGGTGTGACTCCCCACATATCGTATTGAAG--TTCGCCTTTTGAGACAGGTGAGCCTTC 2965
Query 77363 ATATGTTTCATAAGGT--CCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420
|| || ||||| ||| || || || ||| | ||| | | |||||| ||
Sbjct 2966 GTAAGTCTCATA-GGTACCCAGCTCCTT-AGCAATCTCAACAGAAGACGTCAATGCAGCG 3023
Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480
| ||||| || ||||| || | ||||| | | |||||| ||||| ||
Sbjct 3024 TGGTAAATAGTCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACTCAAATGGT 3083
Query 77481 TAATGTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538
|| | || || || |||| |||| || | || || || || | | | ||||| | |
Sbjct 3084 AAACG-AAGAGCCAAGAAAG-CATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGT 3141
Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598
| | |||| || | |||||| | | || || || || ||||| || || || |
Sbjct 3142 GACGGAAATTGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGT 3201
Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT 77658
| | || || ||||| |||| | || || | || || | || || | |||| |
Sbjct 3202 TCAAGTTCCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCT 3261
Query 77659 CTATAA----CAAACATGTTC--AAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT 77712
| | | || | ||||| | ||| || ||||| || ||||| || || ||||
Sbjct 3262 CGTTCATGTCCACAAATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCAT 3321
Query 77713 TAGCGTTGGCA---TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCA 77769
| || ||| |||| | || || || || ||||| | || ||||| |
Sbjct 3322 CTG-GT--GCAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGA 3378
Query 77770 GATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGG 77829
| || | |||||||||||| |||||||||| ||||| ||||| || || || | ||||
Sbjct 3379 GGTTCTTTTGGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGG 3438
Query 77830 TTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGT 77889
| || | || | |||| ||| || | ||| | | ||||| || | ||||
Sbjct 3439 TCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---TTTG- 3494
Query 77890 ATCG-CCTCTCTCTTTCATAT--TGAGT---ATATAGCCGTTCAAATTCATCTCCCCAAA 77943
|| ||||| ||| | | | | | | ||| || ||| |||||||| || | |
Sbjct 3495 --CGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATA 3552
Query 77944 CATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAA 78003
||||| |||| ||||||||||| || || ||||||| || |||||| || | | | |
Sbjct 3553 CATCAGCCAACCCAGGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGA 3612
Query 78004 CTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTT 78063
| || |||||||||||||| || ||||| | ||| || ||||| |||| | ||
Sbjct 3613 CACGCTTCATAAAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTT 3672
Query 78064 CTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTT 78123
|||| || || |||||| || || |||||||| | || || | ||||| || |
Sbjct 3673 CTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCT 3732
Query 78124 CTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGG 78183
| || || ||||| | | ||||| || || || || ||||| || | |||||| || |
Sbjct 3733 CAAGGTAGATTGCAAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAG 3792
Query 78184 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAA 78243
| || || |||||| | ||| || | |||||| || || | ||||| || || | ||
Sbjct 3793 TATTGTTGAAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAA 3852
Query 78244 TATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAG 78303
| || ||| | || || || | |||| | || || || || || | || |
Sbjct 3853 TGTAGGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGG 3912
Query 78304 ATATTAGAGCGCAACGT-TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362
| || | ||| | |||| || | |||||||| ||||| || ||||| || ||| |||||
Sbjct 3913 AAATCATAGCAC-ACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATG 3971
Query 78363 TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGA 78422
| || || || || || | |||| || || || || || | ||| ||
Sbjct 3972 TCAATGAGGAAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGG 4031
Query 78423 GATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATG 78482
|| || || || || |||| | || | | ||||| || ||||| || || ||
Sbjct 4032 GAGGCGTGGGTGAAGTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATA 4091
Query 78483 TC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535
|| || | ||||| || || || |||||||| | ||| || || || | |||
Sbjct 4092 TCGTCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 4144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694635151980000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |