Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq68 275 9e-69 >seq68 Length=8748 Score = 275 bits (304), Expect = 9e-69 Identities = 1155/1794 (64%), Gaps = 46/1794 (3%) Strand=Plus/Plus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || || ||||| || | ||||| | | ||||| || |||||||| Sbjct 2369 TTCTTGATCGACGGTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACAT 2428 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || || || ||||| || |||| ||| ||||||||| || | ||| | Sbjct 2429 TCCGGTCTTGAGACCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGT 2488 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 || || |||||||| ||||| || || ||||| | |||||| || | ||||| Sbjct 2489 GGGGTCTTTCATATGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGC 2548 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||||| | ||| || ||| | ||| ||||| | || ||| ||| | ||||| Sbjct 2549 GGCCATTTGAACAATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGAT 2608 Query 77009 ATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 ||| |||||| ||| | | || || || ||||| || || | || || ||||| Sbjct 2609 GTCAGCTGGAATGTTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTT 2668 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | || ||||||| | | || | | | | || || || ||||| | Sbjct 2669 CATGTTGTCTGACCACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGAC 2728 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| ||||| || | || || | ||||| ||| || ||| || |||||||| | | | Sbjct 2729 TTGGAATTCCCCTGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACA 2788 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 ||||| || | ||| |||| ||| || ||||||||||| || || | ||||| Sbjct 2789 CTCATTAAAACCGAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACT 2848 Query 77246 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304 || | || ||| | | | |||| | |||| || ||| ||| |||||||| || | Sbjct 2849 GTTGCGGACACCGTATTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 2907 Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTC-CGTTACTAG-CATATGATCCATT 77362 |||| || |||| | ||||||||| || ||| | || || || ||| || | Sbjct 2908 TAGGTGTGACTCCCCACATATCGTATTGAAG--TTCGCCTTTTGAGACAGGTGAGCCTTC 2965 Query 77363 ATATGTTTCATAAGGT--CCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 || || ||||| ||| || || || ||| | ||| | | |||||| || Sbjct 2966 GTAAGTCTCATA-GGTACCCAGCTCCTT-AGCAATCTCAACAGAAGACGTCAATGCAGCG 3023 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480 | ||||| || ||||| || | ||||| | | |||||| ||||| || Sbjct 3024 TGGTAAATAGTCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACTCAAATGGT 3083 Query 77481 TAATGTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 || | || || || |||| |||| || | || || || || | | | ||||| | | Sbjct 3084 AAACG-AAGAGCCAAGAAAG-CATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGT 3141 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | | |||| || | |||||| | | || || || || ||||| || || || | Sbjct 3142 GACGGAAATTGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGT 3201 Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT 77658 | | || || ||||| |||| | || || | || || | || || | |||| | Sbjct 3202 TCAAGTTCCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCT 3261 Query 77659 CTATAA----CAAACATGTTC--AAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT 77712 | | | || | ||||| | ||| || ||||| || ||||| || || |||| Sbjct 3262 CGTTCATGTCCACAAATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCAT 3321 Query 77713 TAGCGTTGGCA---TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCA 77769 | || ||| |||| | || || || || ||||| | || ||||| | Sbjct 3322 CTG-GT--GCAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGA 3378 Query 77770 GATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGG 77829 | || | |||||||||||| |||||||||| ||||| ||||| || || || | |||| Sbjct 3379 GGTTCTTTTGGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGG 3438 Query 77830 TTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGT 77889 | || | || | |||| ||| || | ||| | | ||||| || | |||| Sbjct 3439 TCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---TTTG- 3494 Query 77890 ATCG-CCTCTCTCTTTCATAT--TGAGT---ATATAGCCGTTCAAATTCATCTCCCCAAA 77943 || ||||| ||| | | | | | | ||| || ||| |||||||| || | | Sbjct 3495 --CGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATA 3552 Query 77944 CATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAA 78003 ||||| |||| ||||||||||| || || ||||||| || |||||| || | | | | Sbjct 3553 CATCAGCCAACCCAGGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGA 3612 Query 78004 CTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTT 78063 | || |||||||||||||| || ||||| | ||| || ||||| |||| | || Sbjct 3613 CACGCTTCATAAAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTT 3672 Query 78064 CTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTT 78123 |||| || || |||||| || || |||||||| | || || | ||||| || | Sbjct 3673 CTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCT 3732 Query 78124 CTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGG 78183 | || || ||||| | | ||||| || || || || ||||| || | |||||| || | Sbjct 3733 CAAGGTAGATTGCAAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAG 3792 Query 78184 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAA 78243 | || || |||||| | ||| || | |||||| || || | ||||| || || | || Sbjct 3793 TATTGTTGAAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAA 3852 Query 78244 TATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAG 78303 | || ||| | || || || | |||| | || || || || || | || | Sbjct 3853 TGTAGGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGG 3912 Query 78304 ATATTAGAGCGCAACGT-TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362 | || | ||| | |||| || | |||||||| ||||| || ||||| || ||| ||||| Sbjct 3913 AAATCATAGCAC-ACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATG 3971 Query 78363 TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGA 78422 | || || || || || | |||| || || || || || | ||| || Sbjct 3972 TCAATGAGGAAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGG 4031 Query 78423 GATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATG 78482 || || || || || |||| | || | | ||||| || ||||| || || || Sbjct 4032 GAGGCGTGGGTGAAGTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATA 4091 Query 78483 TC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || || | ||||| || || || |||||||| | ||| || || || | ||| Sbjct 4092 TCGTCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 4144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694635151980000