Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq68 260 2e-64 >seq68 Length=8748 Score = 260 bits (288), Expect = 2e-64 Identities = 1148/1792 (64%), Gaps = 34/1792 (2%) Strand=Plus/Plus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | ||||| ||||| || | |||||| | | ||||| || |||||||| Sbjct 2369 TTCTTGATCGACGGTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACAT 2428 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || || || ||||| || |||| ||| ||||||||| || | ||| | Sbjct 2429 TCCGGTCTTGAGACCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGT 2488 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || || |||||||| ||||| || || ||||| | |||||| || | ||||| Sbjct 2489 GGGGTCTTTCATATGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGC 2548 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||||| | ||| || ||| | ||| ||||| | || ||| ||| | ||||| Sbjct 2549 GGCCATTTGAACAATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGAT 2608 Query 75604 ATCATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 ||| |||||| || | | || || || || ||||| |||| || || ||||| Sbjct 2609 GTCAGCTGGAATGTTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTT 2668 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || | || ||||||| | ||| | | | | || || || ||||| | Sbjct 2669 CATGTTGTCTGACCACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGAC 2728 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| ||||| || | || || | |||| ||| || ||| || |||||||| | | | Sbjct 2729 TTGGAATTCCCCTGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACA 2788 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||||| || | ||| |||| || || || |||||||| || || | ||||| Sbjct 2789 CTCATTAAAACCGAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACT 2848 Query 75841 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 || | || ||| | | | |||| | |||| || ||| ||| |||||||| || | Sbjct 2849 GTTGCGGACACCGTATTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 2907 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTC-CGTTGCTAG-CATATGATCCATT 75957 ||| || |||| | ||||||||| || ||| | || || || ||| || | Sbjct 2908 TAGGTGTGACTCCCCACATATCGTATTGAAG--TTCGCCTTTTGAGACAGGTGAGCCTTC 2965 Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTC--GCCTCTAACGCACCG 76015 || || || || || || || | ||| | || |||| | | || ||| || Sbjct 2966 GTAAGTCTCATAGGTACCCAGCTCCTTAGCAA--TCTCAACAGAAGACGTCAATGCAGCG 3023 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 | ||||| || ||||| || | || || | | |||||| | ||||| || Sbjct 3024 TGGTAAATAGTCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACTCAAATGGT 3083 Query 76076 TAATGTAAAAG--AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 || | || || || ||| ||||| || || || || || || | | | ||||| | | Sbjct 3084 AAACG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGT 3141 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | | |||| || |||||| | | ||||| || || || || || || || | Sbjct 3142 GACGGAAATTGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGT 3201 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253 | | || |||||||| |||| | || || | || || | || || | |||| | Sbjct 3202 TCAAGTTCCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCT 3261 Query 76254 CTATCA----CAAACATATTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307 | ||| || | || || ||||| || ||||| || ||||| || || |||| Sbjct 3262 CGTTCATGTCCACAAATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCAT 3321 Query 76308 TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGAT 76367 | | |||| | || || ||||| ||||| | || || || || | Sbjct 3322 CTGGTGCAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGT 3381 Query 76368 TTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTT 76427 | | |||||||||||| || || |||| ||||| ||||| | || || |||| || | Sbjct 3382 TCTTTTGGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCT 3441 Query 76428 CAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGT-AT 76486 | | || | |||| ||| || | ||| | | ||||| || | |||| | Sbjct 3442 CGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---TTTGCGAC 3498 Query 76487 CGCTTCTCTCTTTCATATTG-TGT-ATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 | || | || ||| || | | ||| | ||| |||||||| || | |||||| Sbjct 3499 CTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAG 3558 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 |||| ||||| ||||| || |||||||||| || ||| || || | | | || || | Sbjct 3559 CCAACCCAGGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCT 3618 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 ||||||||||||| || ||||| | ||| || ||||| |||| | |||||| | Sbjct 3619 TCATAAAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCT 3678 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 | || |||||| || || || ||||| | || || | ||||| || || || | Sbjct 3679 TACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGT 3738 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | || || | |||| || || || || || ||||| || | |||||| ||||| || | Sbjct 3739 AGATTGCAAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGT 3798 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844 | |||||| | ||| || | ||| || || || ||||||| || || | ||| || Sbjct 3799 TGAAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGG 3858 Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904 ||| ||||| || | ||| || || || || || || |||| || || | Sbjct 3859 CACCAGTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCA 3918 Query 76905 GAGCACAGCGT-TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963 |||||| ||| || | || || || || || || |||||||| ||| |||||| || Sbjct 3919 TAGCACA-CGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATG 3977 Query 76964 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCA 77023 || || || || | |||| || || || || || | |||||| || || Sbjct 3978 AGGAAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCG 4037 Query 77024 TGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCA 77082 || ||||| |||| | || | | ||||| || ||||| | || ||||| || Sbjct 4038 TGGGTGAAGTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCA 4097 Query 77083 TTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 | ||||| || || || |||||||| | ||| || || || |||||| || Sbjct 4098 CCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCA 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712899867240000