Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq68 260 2e-64
>seq68
Length=8748
Score = 260 bits (288), Expect = 2e-64
Identities = 1148/1792 (64%), Gaps = 34/1792 (2%)
Strand=Plus/Plus
Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423
||||| ||| | ||||| ||||| || | |||||| | | ||||| || ||||||||
Sbjct 2369 TTCTTGATCGACGGTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACAT 2428
Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483
|| || || ||||| || |||| ||| ||||||||| || | ||| |
Sbjct 2429 TCCGGTCTTGAGACCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGT 2488
Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543
|| || |||||||| ||||| || || ||||| | |||||| || | |||||
Sbjct 2489 GGGGTCTTTCATATGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGC 2548
Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603
||||||| | ||| || ||| | ||| ||||| | || ||| ||| | |||||
Sbjct 2549 GGCCATTTGAACAATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGAT 2608
Query 75604 ATCATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660
||| |||||| || | | || || || || ||||| |||| || || |||||
Sbjct 2609 GTCAGCTGGAATGTTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTT 2668
Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720
|| | || ||||||| | ||| | | | | || || || ||||| |
Sbjct 2669 CATGTTGTCTGACCACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGAC 2728
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
||| ||||| || | || || | |||| ||| || ||| || |||||||| | | |
Sbjct 2729 TTGGAATTCCCCTGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACA 2788
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
||||| || | ||| |||| || || || |||||||| || || | |||||
Sbjct 2789 CTCATTAAAACCGAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACT 2848
Query 75841 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899
|| | || ||| | | | |||| | |||| || ||| ||| |||||||| || |
Sbjct 2849 GTTGCGGACACCGTATTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 2907
Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTC-CGTTGCTAG-CATATGATCCATT 75957
||| || |||| | ||||||||| || ||| | || || || ||| || |
Sbjct 2908 TAGGTGTGACTCCCCACATATCGTATTGAAG--TTCGCCTTTTGAGACAGGTGAGCCTTC 2965
Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTC--GCCTCTAACGCACCG 76015
|| || || || || || || | ||| | || |||| | | || ||| ||
Sbjct 2966 GTAAGTCTCATAGGTACCCAGCTCCTTAGCAA--TCTCAACAGAAGACGTCAATGCAGCG 3023
Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075
| ||||| || ||||| || | || || | | |||||| | ||||| ||
Sbjct 3024 TGGTAAATAGTCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACTCAAATGGT 3083
Query 76076 TAATGTAAAAG--AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133
|| | || || || ||| ||||| || || || || || || | | | ||||| | |
Sbjct 3084 AAACG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGT 3141
Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193
| | |||| || |||||| | | ||||| || || || || || || || |
Sbjct 3142 GACGGAAATTGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGT 3201
Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253
| | || |||||||| |||| | || || | || || | || || | |||| |
Sbjct 3202 TCAAGTTCCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCT 3261
Query 76254 CTATCA----CAAACATATTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307
| ||| || | || || ||||| || ||||| || ||||| || || ||||
Sbjct 3262 CGTTCATGTCCACAAATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCAT 3321
Query 76308 TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGAT 76367
| | |||| | || || ||||| ||||| | || || || || |
Sbjct 3322 CTGGTGCAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGT 3381
Query 76368 TTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTT 76427
| | |||||||||||| || || |||| ||||| ||||| | || || |||| || |
Sbjct 3382 TCTTTTGGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCT 3441
Query 76428 CAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGT-AT 76486
| | || | |||| ||| || | ||| | | ||||| || | |||| |
Sbjct 3442 CGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---TTTGCGAC 3498
Query 76487 CGCTTCTCTCTTTCATATTG-TGT-ATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544
| || | || ||| || | | ||| | ||| |||||||| || | ||||||
Sbjct 3499 CTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAG 3558
Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604
|||| ||||| ||||| || |||||||||| || ||| || || | | | || || |
Sbjct 3559 CCAACCCAGGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCT 3618
Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664
||||||||||||| || ||||| | ||| || ||||| |||| | |||||| |
Sbjct 3619 TCATAAAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCT 3678
Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724
| || |||||| || || || ||||| | || || | ||||| || || || |
Sbjct 3679 TACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGT 3738
Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784
| || || | |||| || || || || || ||||| || | |||||| ||||| || |
Sbjct 3739 AGATTGCAAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGT 3798
Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844
| |||||| | ||| || | ||| || || || ||||||| || || | ||| ||
Sbjct 3799 TGAAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGG 3858
Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904
||| ||||| || | ||| || || || || || || |||| || || |
Sbjct 3859 CACCAGTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCA 3918
Query 76905 GAGCACAGCGT-TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963
|||||| ||| || | || || || || || || |||||||| ||| |||||| ||
Sbjct 3919 TAGCACA-CGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATG 3977
Query 76964 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCA 77023
|| || || || | |||| || || || || || | |||||| || ||
Sbjct 3978 AGGAAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCG 4037
Query 77024 TGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCA 77082
|| ||||| |||| | || | | ||||| || ||||| | || ||||| ||
Sbjct 4038 TGGGTGAAGTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCA 4097
Query 77083 TTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134
| ||||| || || || |||||||| | ||| || || || |||||| ||
Sbjct 4098 CCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCA 4148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712899867240000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |