Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3721 123 6e-23 seq3755 107 4e-18 seq542 89.7 1e-12 >seq3721 Length=43933 Score = 123 bits (136), Expect = 6e-23 Identities = 147/198 (74%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || |||||||||||||| |||| | |||| || ||||| | Sbjct 40557 CAAG-TGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCGA 40499 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||| || || | |||||||||| | || || ||||| ||||| | Sbjct 40498 GTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGGA 40439 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | | || ||| || || |||||||| || || |||| Sbjct 40438 TCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTGC 40379 Query 152077 CCGTGAGAGTCTTCACGA 152094 | ||||||||||| |||| Sbjct 40378 CGGTGAGAGTCTTGACGA 40361 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||||||||| |||||||| |||| || ||| | ||||| || | Sbjct 40785 CAAG-TGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTCGA 40727 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || |||||||| | |||||||||| | ||| || ||||| ||||| | Sbjct 40726 GCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGA 40667 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| | || | | ||||||| ||| || || | || || || || | Sbjct 40666 TTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTTC 40607 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||| ||||| Sbjct 40606 CGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||||||||| |||||||||||||| ||| || || | || || Sbjct 40278 GAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTC 40219 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || |||||||| | | ||| ||||||| | ||||| ||||| || Sbjct 40218 TTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 40159 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATA 152069 || || || ||||| | || | | ||| ||| | ||| || || ||||| || Sbjct 40158 CTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTGGA--CTCAACCTCGAGAGTGATG 40101 Query 152070 GTTTTGCCCGT 152080 || ||||| || Sbjct 40100 GTCTTGCCGGT 40090 >seq3755 Length=35748 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||| ||||| |||||||||||||| |||| | || | |||||| Sbjct 18304 AGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 18363 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| | | || || || | | ||||| ||||| || Sbjct 18364 TCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCC 18423 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | | || || || || || || || || ||| Sbjct 18424 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 18483 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| ||||||| |||||| Sbjct 18484 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515 >seq542 Length=29042 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 |||||||||||||| || | | |||| ||||| || || ||||| |||||||||| Sbjct 10248 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTT--CCGGCGAAGA 10191 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | || || |||| | ||||| ||||| || || || || |||||| | | Sbjct 10190 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 10131 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | | || ||| ||| || ||||| || ||||| || ||||| || ||||| |||| Sbjct 10130 CAATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACGA 10071 Query 152095 AG 152096 || Sbjct 10070 AG 10069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153763514600125