Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 123 6e-23
seq3755 107 4e-18
seq542 89.7 1e-12
>seq3721
Length=43933
Score = 123 bits (136), Expect = 6e-23
Identities = 147/198 (74%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||||||||| || |||||||||||||| |||| | |||| || ||||| |
Sbjct 40557 CAAG-TGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCGA 40499
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| |||||||| || || | |||||||||| | || || ||||| ||||| |
Sbjct 40498 GTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGGA 40439
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | | | || ||| || || |||||||| || || ||||
Sbjct 40438 TCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTGC 40379
Query 152077 CCGTGAGAGTCTTCACGA 152094
| ||||||||||| ||||
Sbjct 40378 CGGTGAGAGTCTTGACGA 40361
Score = 111 bits (122), Expect = 4e-19
Identities = 150/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||||||||| |||||||| |||| || ||| | ||||| || |
Sbjct 40785 CAAG-TGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTCGA 40727
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || || |||||||| | |||||||||| | ||| || ||||| ||||| |
Sbjct 40726 GCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGA 40667
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
|||| || ||| | || | | ||||||| ||| || || | || || || || |
Sbjct 40666 TTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTTC 40607
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || ||||| ||||||| |||||
Sbjct 40606 CGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Score = 91.5 bits (100), Expect = 3e-13
Identities = 136/191 (71%), Gaps = 4/191 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| ||||| ||||||||||| |||||||||||||| ||| || || | || ||
Sbjct 40278 GAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTC 40219
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || || || |||||||| | | ||| ||||||| | ||||| ||||| ||
Sbjct 40218 TTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 40159
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATA 152069
|| || || ||||| | || | | ||| ||| | ||| || || ||||| ||
Sbjct 40158 CTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTGGA--CTCAACCTCGAGAGTGATG 40101
Query 152070 GTTTTGCCCGT 152080
|| ||||| ||
Sbjct 40100 GTCTTGCCGGT 40090
>seq3755
Length=35748
Score = 107 bits (118), Expect = 4e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | |||||||| ||||| |||||||||||||| |||| | || | ||||||
Sbjct 18304 AGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 18363
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| | | || || || | | ||||| ||||| ||
Sbjct 18364 TCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCC 18423
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || |||||| | || | | | || || || || || || || || |||
Sbjct 18424 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 18483
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| ||||| ||||||| ||||||
Sbjct 18484 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515
>seq542
Length=29042
Score = 89.7 bits (98), Expect = 1e-12
Identities = 130/182 (71%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974
|||||||||||||| || | | |||| ||||| || || ||||| ||||||||||
Sbjct 10248 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTT--CCGGCGAAGA 10191
Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034
| | | || || |||| | ||||| ||||| || || || || |||||| | |
Sbjct 10190 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 10131
Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
| | | | || ||| ||| || ||||| || ||||| || ||||| || ||||| ||||
Sbjct 10130 CAATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACGA 10071
Query 152095 AG 152096
||
Sbjct 10070 AG 10069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153763514600125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |