Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3755 188 1e-42 seq3721 178 3e-39 seq542 147 5e-30 seq485 95.1 3e-14 >seq3755 Length=35748 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| |||| || | ||| || ||||||||||||||||| | | Sbjct 18289 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 18348 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || ||||| || ||||| ||||||||||||||||| ||| ||| Sbjct 18349 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGA 18408 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || || | ||||| || || || | ||| || Sbjct 18409 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 18468 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || |||||||| | ||||| ||||| |||||||| Sbjct 18469 TCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515 >seq3721 Length=43933 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| || | || || || || |||||||| || |||| Sbjct 41034 ACCGCCACGGAGACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGA 40975 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||||||| | || || || || |||||||| || |||||||| || Sbjct 40974 CAGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGG 40915 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||||||||||||| || ||| |||| || || ||||||| ||| || Sbjct 40914 GATACCCTCCTTGTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCAC 40855 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || ||||||||||| ||||| |||||||| Sbjct 40854 TTCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || ||| ||||||||||||||||| | Sbjct 40578 ACCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 40519 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| || || |||||||| ||||| || |||| |||||| ||||| || Sbjct 40518 GAGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGG 40459 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| ||||||||||| | || || | ||||| || || |||| |||||| Sbjct 40458 AATGCCCTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGAC 40399 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || |||||||| ||||| || || | |||||| |||| Sbjct 40398 CTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 40361 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || | || |||||||| ||||||||||| | Sbjct 40806 ACCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGA 40747 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || |||||||| | |||||| ||||| || Sbjct 40746 TAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGG 40687 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| |||||||| || | ||||| | ||||| ||||| || | || || Sbjct 40686 GATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAAC 40627 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 40626 CTCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Score = 114 bits (126), Expect = 3e-20 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||| ||||| || || || || ||||| | || || ||||||||||||||||| Sbjct 40293 ACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCT 40234 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || || || || || || || || || || |||||||| || |||||||| | Sbjct 40233 CAAG-GTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGG 40175 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCG 283049 |||| |||||||| || |||||||| ||| || ||| | ||||| ||||| | || Sbjct 40174 GAATTCCCTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGCTGGACTCA 40116 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGT 283075 || ||||||||||| ||||| || || Sbjct 40115 ACCTCGAGAGTGATGGTCTTGCCGGT 40090 >seq542 Length=29042 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| | ||| || || |||||||| ||||| || ||||| |||||| Sbjct 10248 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATC 10189 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||||||||| || ||||| ||||||||||| |||||||| | || || | || Sbjct 10188 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 10129 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || || |||| || || || || ||||| ||||| ||||| | ||||| ||||| Sbjct 10128 ATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACGAA 10070 >seq485 Length=41282 Score = 95.1 bits (104), Expect = 3e-14 Identities = 169/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 230164 TCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTC 230223 || |||| || | |||| | |||| | |||||| | || ||| |||| ||| | Sbjct 7214 TCATCACCGAGGCTGTTGAGATTGAACAAGAGTTCTTGACTGAGGCTCTTCCATGCGCGC 7273 Query 230224 TTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTT 230283 || | |||||||| | | | ||| |||||| ||||| ||||| || || ||| | Sbjct 7274 TTCTTGGCATGAACTCGAACTTGATGAAGCAATACATCGAGTTCGTCGCAGACCGTCTCC 7333 Query 230284 TCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGC 230343 |||| || || || |||| || ||||| || || |||||||||| || |||||| Sbjct 7334 TCGTTGCTCTTGGTAACGACAAGGTGTACAAATCTGCCAACCCCTTCGACTTCATGGAGA 7393 Query 230344 TCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGC 230403 ||| || || || || || ||||||||||| ||| | ||| | || || || | | Sbjct 7394 ACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTCGGTGACTACCAGAAGG 7453 Query 230404 CCGGTGT 230410 | ||||| Sbjct 7454 CTGGTGT 7460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046687231034250