Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq3617 334 8e-87
seq3722 295 7e-75
seq3030 277 2e-69
seq892 208 8e-49
seq1962 206 3e-48
seq2855 165 8e-36
seq713 150 2e-31
seq1759 89.7 5e-13
>seq3617
Length=7527
Score = 334 bits (370), Expect = 8e-87
Identities = 237/274 (86%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403
|||| ||||||||||||||||||||||||||||| ||||||| |||||||| || ||| |
Sbjct 6628 TCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCNTGATCTCGGCTCACTGNAANCTCNG 6687
Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463
||| | || || || |||||||||||||||||||| ||||||||||| |||||||
Sbjct 6688 CCTNCTGGNNTCNNGCNATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGC 6747
Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523
|||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||
Sbjct 6748 CCGCCACCACGCTTGGCTAATTTTTGTATTTTTAATAGAGACAGGGTTTCACCATATTGG 6807
Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583
||||||| ||| ||||||||||||| ||||||| || |||| |||||||||||||||
Sbjct 6808 CCAGGCTAGTCCGGAACTCCTGACCT--TGTGATCTGCCCGCCTTGGCCTCCCAAAGTGC 6865
Query 8584 TGGGATTACAGGCATGAGCCACCGCGCCTGGCCC 8617
||||||||||||||||||||||||| || |||||
Sbjct 6866 TGGGATTACAGGCATGAGCCACCGCACCCGGCCC 6899
>seq3722
Length=4070
Score = 295 bits (326), Expect = 7e-75
Identities = 227/273 (83%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403
|||| || ||| ||||||||||||||||||||| |||||| ||||||| ||||| |||
Sbjct 2000 TCTCGCTTTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTACAACCCCCG 2059
Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463
||||| ||||||||| |||||||||| ||||||||| ||||||| ||| |||||
Sbjct 2060 CCTCCTGGGTTCAAGTGATTCTCCTGCNTCAGCCTCCCNAGTAGCTNGGANNACAGGTGC 2119
Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523
|||| | ||| |||||||| || ||||||||||| ||| |||||||||||||||||
Sbjct 2120 NNNCCACNANGCCCAGCTAATTNTTNTATTTTTAGTANAGACNGGGTTTCACCATGTTGG 2179
Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583
||||| | ||||||| ||||||||| |||||||| ||||||| ||||||||||||||
Sbjct 2180 CCAGGATAGTCTCGATTTCCTGACCT--TGTGATCCGCCTGCCTTGGCCTCCCAAAGTGT 2237
Query 8584 TGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616
|||||||||||| |||||||| || || ||||
Sbjct 2238 TGGGATTACAGGTGTGAGCCACAGCACCCGGCC 2270
>seq3030
Length=13186
Score = 277 bits (306), Expect = 2e-69
Identities = 233/282 (83%), Gaps = 7/282 (2%)
Strand=Plus/Plus
Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403
|||| |||||| |||||||||||| ||| ||||| |||| ||||||||||| || ||
Sbjct 40 TCTCGCTCTGTCGCCCAGGCTGGATTGCTGTGGCGGAATCTTGGCTCACTGCAAGCTGCG 99
Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463
|||||| |||||| || |||||||||||||||||||| |||||||||| ||||||||
Sbjct 100 CCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGACTACAGGCAC 159
Query 8464 AAGCCACCACGCCAAGCTAA--TTTTTGTATTTTTAGTAGAGAGAGGGTT-TCACCATGT 8520
||| ||||||| |||||| ||||||||||||||||||| | | |||| | ||| |||
Sbjct 160 CCGCCTCCACGCCCAGCTAATTTTTTTGTATTTTTAGTAGACACAAGGTTCTTACCCTGT 219
Query 8521 TGGCCAGGCTGGTCTCGAA--CTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAA 8578
|| | |||||||||| ||| | ||||||||| ||||| ||||||||| ||||||||||
Sbjct 220 TGCCTAGGCTGGTCTGGAAGTCCCCTGACCTC--GTGATTCACCTGCCTTGGCCTCCCAA 277
Query 8579 AGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCCTTT 8620
| ||||||||||||| || ||||||| | |||| ||| |||
Sbjct 278 AATGCTGGGATTACAAGCCTGAGCCATCACGCCCAGCCTTTT 319
>seq892
Length=4611
Score = 208 bits (230), Expect = 8e-49
Identities = 159/187 (85%), Gaps = 6/187 (3%)
Strand=Plus/Minus
Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408
||||| |||||| |||||||||||| | ||||||| |||||||| |||||||||
Sbjct 181 CTCTGCCACCCAGGTTGGAGTGCAGTGCCATGATCTCAGCTCACTG--ACCTCCGCC--- 127
Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468
|| ||||||| ||||||||||||||| |||| ||||||||||||||||||||| | |
Sbjct 126 -GGTTTCAAGCGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGATTACAGGCACGCGTC 68
Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528
||||| || ||||||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 67 ACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCTTCATGTTGGTCAGG 8
Query 8529 CTGGTCT 8535
|||||||
Sbjct 7 CTGGTCT 1
>seq1962
Length=755
Score = 206 bits (228), Expect = 3e-48
Identities = 170/205 (83%), Gaps = 3/205 (1%)
Strand=Plus/Minus
Query 8380 GATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTC 8439
||| |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 431 GATGTCCGCTCACTATAACCTCCACCTCCCGGGTTCAAGCTATTCTCCTGCCTTAGCCTC 372
Query 8440 CAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTA--TTTTTA 8497
| |||||||| ||| || ||||| |||||||||| ||||||||| |||| ||||||
Sbjct 371 CTGAGTAGCTAGGAATAAAGGCATTCACCACCACGCC-AGCTAATTTGTGTATTTTTTTA 313
Query 8498 GTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGAT 8557
|| || | |||| |||||||| ||||||||||||| ||||| || |||| | ||
Sbjct 312 ATACAGGTGGCGTTTTGCCATGTTGCCCAGGCTGGTCTCCAACTCTTGGGCTCAAGCAAT 253
Query 8558 CCACCTGCCTCGGCCTCCCAAAGTG 8582
|| ||||||| ||||||||||||||
Sbjct 252 CCTCCTGCCTTGGCCTCCCAAAGTG 228
Score = 141 bits (156), Expect = 1e-28
Identities = 103/118 (87%), Gaps = 1/118 (1%)
Strand=Plus/Minus
Query 8346 TCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCC 8405
|||||| ||||||||||||||||||||| ||| |||||| |||| ||||||||||||||
Sbjct 567 TCACTCCGTTGCCCAGGCTGGAGTGCAGGGGCACGATCTCGGCTCGCTGCAACCTCCGCC 508
Query 8406 TCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463
|||| ||||||||| |||| |||||||||||| | |||||| ||||||||||| ||
Sbjct 507 TCCC-GGTTCAAGCGATTCATGTGCCTCAGCCTCAAAAGTAGCCGGGATTACAGGTAA 451
Score = 109 bits (120), Expect = 6e-19
Identities = 81/94 (86%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 8518 TGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCA 8577
|||| || ||| |||||| || ||||||| ||| ||||||| ||||||| |||||||||
Sbjct 754 TGTTAGCTAGGATGGTCTAGATCTCCTGATCTC--GTGATCCGCCTGCCTTGGCCTCCCA 697
Query 8578 AAGTGCTGGGATTACAGGCATGAGCCACCGCGCC 8611
||||||||||||||||||| |||| | |||||||
Sbjct 696 AAGTGCTGGGATTACAGGCGTGAGTCCCCGCGCC 663
>seq2855
Length=770
Score = 165 bits (182), Expect = 8e-36
Identities = 200/272 (74%), Gaps = 4/272 (1%)
Strand=Plus/Plus
Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408
|||||| ||||| ||||||||||||||| |||| | |||||||| |||||| ||||
Sbjct 364 CTCTGTCACCCAGACTGGAGTGCAGTGGCGTGATTCCAGCTCACTGTAACCTCAAACTCC 423
Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468
| | ||||| || |||| ||||||| ||| || ||||| ||| || || | |||
Sbjct 424 TGAGCTCAAGTGATCCTCCCACCTCAGCTTCCTGAATAGCTAGGACTATAGCTGCATGCC 483
Query 8469 ACCACGCCAAGCTAAT----TTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGC 8524
|||| || ||||||| |||| | |||| | |||| |||| |||| |||||
Sbjct 484 ACCATGCACAGCTAATTTACTTTTTTGTTTTGTTTTGAGATAGGGCCTCACTCTGTTGCT 543
Query 8525 CAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCT 8584
| || | |||| |||||||| |||| | || ||| ||| ||||||| ||||||||
Sbjct 544 CTGGGTAGTCTGGAACTCCTAGACTCAAGCTCTCTGCCTACCTTGGCCTCCTAAAGTGCT 603
Query 8585 GGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616
|| |||| ||||||||||||| || | ||||
Sbjct 604 GGAATTATAGGCATGAGCCACTGCATCCGGCC 635
Score = 107 bits (118), Expect = 2e-18
Identities = 76/87 (87%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403
|||| |||||| |||||||||||||||||||||| |||| | ||||||||||| |||||
Sbjct 684 TCTCGCTCTGTGGCCCAGGCTGGAGTGCAGTGGCGCGATCCCGGCTCACTGCAAGCTCCG 743
Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGC 8430
|| || ||||||| || ||||||||||
Sbjct 744 CCGCCAGGGTTCACGCCATTCTCCTGC 770
>seq713
Length=15777
Score = 150 bits (166), Expect = 2e-31
Identities = 120/143 (84%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404
||||||| ||||||||||||||| | || || | | ||||| ||||||||||||||||
Sbjct 143 TCACTCTTGTTGCCCAGGCTGGAATTCAATGTCATAATCTCAGCTCACTGCAACCTCCTT 84
Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464
||||| || |||||| || ||||||||||||||||| ||||||| |||||||||||| |
Sbjct 83 CTCCCAGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCAAGTAGCTTGGATTACAGGCACA 24
Query 8465 AGCCACCACGCCAAGCTAATTTT 8487
|||| | ||| ||||||||||
Sbjct 23 CACCACTATGCCCAGCTAATTTT 1
>seq1759
Length=639
Score = 89.7 bits (98), Expect = 5e-13
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403
||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||
Sbjct 62 TCTCACTCTGTTGACCAGGATGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCCG 3
Query 8404 CC 8405
||
Sbjct 2 CC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521462740425000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |