Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3617 334 8e-87 seq3722 295 7e-75 seq3030 277 2e-69 seq892 208 8e-49 seq1962 206 3e-48 seq2855 165 8e-36 seq713 150 2e-31 seq1759 89.7 5e-13 >seq3617 Length=7527 Score = 334 bits (370), Expect = 8e-87 Identities = 237/274 (86%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| ||||||||||||||||||||||||||||| ||||||| |||||||| || ||| | Sbjct 6628 TCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCNTGATCTCGGCTCACTGNAANCTCNG 6687 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||| | || || || |||||||||||||||||||| ||||||||||| ||||||| Sbjct 6688 CCTNCTGGNNTCNNGCNATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGC 6747 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 |||||||||| ||||||||||||||||||| |||||| ||||||||||||| |||| Sbjct 6748 CCGCCACCACGCTTGGCTAATTTTTGTATTTTTAATAGAGACAGGGTTTCACCATATTGG 6807 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 ||||||| ||| ||||||||||||| ||||||| || |||| ||||||||||||||| Sbjct 6808 CCAGGCTAGTCCGGAACTCCTGACCT--TGTGATCTGCCCGCCTTGGCCTCCCAAAGTGC 6865 Query 8584 TGGGATTACAGGCATGAGCCACCGCGCCTGGCCC 8617 ||||||||||||||||||||||||| || ||||| Sbjct 6866 TGGGATTACAGGCATGAGCCACCGCACCCGGCCC 6899 >seq3722 Length=4070 Score = 295 bits (326), Expect = 7e-75 Identities = 227/273 (83%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| || ||| ||||||||||||||||||||| |||||| ||||||| ||||| ||| Sbjct 2000 TCTCGCTTTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTACAACCCCCG 2059 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||| ||||||||| |||||||||| ||||||||| ||||||| ||| ||||| Sbjct 2060 CCTCCTGGGTTCAAGTGATTCTCCTGCNTCAGCCTCCCNAGTAGCTNGGANNACAGGTGC 2119 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 |||| | ||| |||||||| || ||||||||||| ||| ||||||||||||||||| Sbjct 2120 NNNCCACNANGCCCAGCTAATTNTTNTATTTTTAGTANAGACNGGGTTTCACCATGTTGG 2179 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 ||||| | ||||||| ||||||||| |||||||| ||||||| |||||||||||||| Sbjct 2180 CCAGGATAGTCTCGATTTCCTGACCT--TGTGATCCGCCTGCCTTGGCCTCCCAAAGTGT 2237 Query 8584 TGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||||||||| |||||||| || || |||| Sbjct 2238 TGGGATTACAGGTGTGAGCCACAGCACCCGGCC 2270 >seq3030 Length=13186 Score = 277 bits (306), Expect = 2e-69 Identities = 233/282 (83%), Gaps = 7/282 (2%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| |||||||||||| ||| ||||| |||| ||||||||||| || || Sbjct 40 TCTCGCTCTGTCGCCCAGGCTGGATTGCTGTGGCGGAATCTTGGCTCACTGCAAGCTGCG 99 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||||| |||||| || |||||||||||||||||||| |||||||||| |||||||| Sbjct 100 CCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGACTACAGGCAC 159 Query 8464 AAGCCACCACGCCAAGCTAA--TTTTTGTATTTTTAGTAGAGAGAGGGTT-TCACCATGT 8520 ||| ||||||| |||||| ||||||||||||||||||| | | |||| | ||| ||| Sbjct 160 CCGCCTCCACGCCCAGCTAATTTTTTTGTATTTTTAGTAGACACAAGGTTCTTACCCTGT 219 Query 8521 TGGCCAGGCTGGTCTCGAA--CTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAA 8578 || | |||||||||| ||| | ||||||||| ||||| ||||||||| |||||||||| Sbjct 220 TGCCTAGGCTGGTCTGGAAGTCCCCTGACCTC--GTGATTCACCTGCCTTGGCCTCCCAA 277 Query 8579 AGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCCTTT 8620 | ||||||||||||| || ||||||| | |||| ||| ||| Sbjct 278 AATGCTGGGATTACAAGCCTGAGCCATCACGCCCAGCCTTTT 319 >seq892 Length=4611 Score = 208 bits (230), Expect = 8e-49 Identities = 159/187 (85%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 ||||| |||||| |||||||||||| | ||||||| |||||||| ||||||||| Sbjct 181 CTCTGCCACCCAGGTTGGAGTGCAGTGCCATGATCTCAGCTCACTG--ACCTCCGCC--- 127 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 || ||||||| ||||||||||||||| |||| ||||||||||||||||||||| | | Sbjct 126 -GGTTTCAAGCGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGATTACAGGCACGCGTC 68 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 ||||| || ||||||||||||||||||||||||||| ||||||| |||||||| |||| Sbjct 67 ACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCTTCATGTTGGTCAGG 8 Query 8529 CTGGTCT 8535 ||||||| Sbjct 7 CTGGTCT 1 >seq1962 Length=755 Score = 206 bits (228), Expect = 3e-48 Identities = 170/205 (83%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 8380 GATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTC 8439 ||| |||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 431 GATGTCCGCTCACTATAACCTCCACCTCCCGGGTTCAAGCTATTCTCCTGCCTTAGCCTC 372 Query 8440 CAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTA--TTTTTA 8497 | |||||||| ||| || ||||| |||||||||| ||||||||| |||| |||||| Sbjct 371 CTGAGTAGCTAGGAATAAAGGCATTCACCACCACGCC-AGCTAATTTGTGTATTTTTTTA 313 Query 8498 GTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGAT 8557 || || | |||| |||||||| ||||||||||||| ||||| || |||| | || Sbjct 312 ATACAGGTGGCGTTTTGCCATGTTGCCCAGGCTGGTCTCCAACTCTTGGGCTCAAGCAAT 253 Query 8558 CCACCTGCCTCGGCCTCCCAAAGTG 8582 || ||||||| |||||||||||||| Sbjct 252 CCTCCTGCCTTGGCCTCCCAAAGTG 228 Score = 141 bits (156), Expect = 1e-28 Identities = 103/118 (87%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 8346 TCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCC 8405 |||||| ||||||||||||||||||||| ||| |||||| |||| |||||||||||||| Sbjct 567 TCACTCCGTTGCCCAGGCTGGAGTGCAGGGGCACGATCTCGGCTCGCTGCAACCTCCGCC 508 Query 8406 TCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||| ||||||||| |||| |||||||||||| | |||||| ||||||||||| || Sbjct 507 TCCC-GGTTCAAGCGATTCATGTGCCTCAGCCTCAAAAGTAGCCGGGATTACAGGTAA 451 Score = 109 bits (120), Expect = 6e-19 Identities = 81/94 (86%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 8518 TGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCA 8577 |||| || ||| |||||| || ||||||| ||| ||||||| ||||||| ||||||||| Sbjct 754 TGTTAGCTAGGATGGTCTAGATCTCCTGATCTC--GTGATCCGCCTGCCTTGGCCTCCCA 697 Query 8578 AAGTGCTGGGATTACAGGCATGAGCCACCGCGCC 8611 ||||||||||||||||||| |||| | ||||||| Sbjct 696 AAGTGCTGGGATTACAGGCGTGAGTCCCCGCGCC 663 >seq2855 Length=770 Score = 165 bits (182), Expect = 8e-36 Identities = 200/272 (74%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| ||||| ||||||||||||||| |||| | |||||||| |||||| |||| Sbjct 364 CTCTGTCACCCAGACTGGAGTGCAGTGGCGTGATTCCAGCTCACTGTAACCTCAAACTCC 423 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 | | ||||| || |||| ||||||| ||| || ||||| ||| || || | ||| Sbjct 424 TGAGCTCAAGTGATCCTCCCACCTCAGCTTCCTGAATAGCTAGGACTATAGCTGCATGCC 483 Query 8469 ACCACGCCAAGCTAAT----TTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGC 8524 |||| || ||||||| |||| | |||| | |||| |||| |||| ||||| Sbjct 484 ACCATGCACAGCTAATTTACTTTTTTGTTTTGTTTTGAGATAGGGCCTCACTCTGTTGCT 543 Query 8525 CAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCT 8584 | || | |||| |||||||| |||| | || ||| ||| ||||||| |||||||| Sbjct 544 CTGGGTAGTCTGGAACTCCTAGACTCAAGCTCTCTGCCTACCTTGGCCTCCTAAAGTGCT 603 Query 8585 GGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 || |||| ||||||||||||| || | |||| Sbjct 604 GGAATTATAGGCATGAGCCACTGCATCCGGCC 635 Score = 107 bits (118), Expect = 2e-18 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| |||||||||||||||||||||| |||| | ||||||||||| ||||| Sbjct 684 TCTCGCTCTGTGGCCCAGGCTGGAGTGCAGTGGCGCGATCCCGGCTCACTGCAAGCTCCG 743 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGC 8430 || || ||||||| || |||||||||| Sbjct 744 CCGCCAGGGTTCACGCCATTCTCCTGC 770 >seq713 Length=15777 Score = 150 bits (166), Expect = 2e-31 Identities = 120/143 (84%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| ||||||||||||||| | || || | | ||||| |||||||||||||||| Sbjct 143 TCACTCTTGTTGCCCAGGCTGGAATTCAATGTCATAATCTCAGCTCACTGCAACCTCCTT 84 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 ||||| || |||||| || ||||||||||||||||| ||||||| |||||||||||| | Sbjct 83 CTCCCAGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCAAGTAGCTTGGATTACAGGCACA 24 Query 8465 AGCCACCACGCCAAGCTAATTTT 8487 |||| | ||| |||||||||| Sbjct 23 CACCACTATGCCCAGCTAATTTT 1 >seq1759 Length=639 Score = 89.7 bits (98), Expect = 5e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||| Sbjct 62 TCTCACTCTGTTGACCAGGATGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCCG 3 Query 8404 CC 8405 || Sbjct 2 CC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521462740425000