Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3755 140 2e-28 seq3721 114 9e-21 seq542 105 5e-18 >seq3755 Length=35748 Score = 140 bits (154), Expect = 2e-28 Identities = 160/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||||||||||||||| |||| || ||| | || || Sbjct 18307 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 18366 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||||||| || ||||| | || | || ||||| ||| Sbjct 18367 AGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTGG 18426 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| || | |||||| ||||| | || || || | Sbjct 18427 ATCTTGGACTTGACATTGT--CGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTT 18484 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 | |||||||||||||| |||||||| ||||||| Sbjct 18485 TACCCGTGAGGGTCTTGACGAAGATCTGCATGA 18517 >seq3721 Length=43933 Score = 114 bits (126), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || ||| ||||| |||||||| |||| || || | || || Sbjct 40787 ACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTCG 40728 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | ||| ||||| || | || | ||| ||||| || Sbjct 40727 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 40668 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || ||| ||| || ||| | |||||||| | || || ||||||| || || |||| Sbjct 40667 ATTTTCGACTTTACATTGT--CGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCT 40610 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || |||||||| |||||||||||||| Sbjct 40609 TTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Score = 102 bits (112), Expect = 6e-17 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| || ||||||||||||||||| |||| ||| || |||| || Sbjct 40560 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTC 40501 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || ||||| || |||| ||| ||||| || | ||| | || ||||| || Sbjct 40500 GAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCTTG 40441 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | ||||| |||| ||||| ||||| | || || ||| Sbjct 40440 GATCTTAGACTTGACATTGT--CGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTC 40383 Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327 || || ||||| ||||| |||| Sbjct 40382 TTGCCGGTGAGAGTCTTGACGA 40361 >seq542 Length=29042 Score = 105 bits (116), Expect = 5e-18 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||||||||||||||| || | || || | || || || ||||| ||||| |||| Sbjct 10250 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGA 10191 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||| || ||||| | || | || ||||| ||| ||||| ||| || ||| Sbjct 10190 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 10131 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| |||| || |||||||| | || || ||||||||||| |||||||| || Sbjct 10130 --CAATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGAC 10073 Query 44326 GAAG 44329 |||| Sbjct 10072 GAAG 10069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359973398890875