Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3755 159 8e-34 seq3721 147 5e-30 seq542 129 1e-24 >seq3755 Length=35748 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| |||||||||||||| ||| ||| || Sbjct 18512 CAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCTGAT 18453 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || ||||| || || || || ||| Sbjct 18452 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAA 18393 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || || |||||||||||| | || ||| |||| || ||| || Sbjct 18392 CGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAACATC 18333 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 18332 CAAAAGGAGTCCACTCTTCA-CTTG 18309 >seq3721 Length=43933 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || ||||| | ||||| || |||||| Sbjct 40582 CAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCAGAC 40641 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || || || || || || || || ||||| |||||||||||| Sbjct 40642 ACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAGCAA 40701 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || |||||||| ||||| | ||||| |||| || ||| | Sbjct 40702 CGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAACATT 40761 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||||| || |||||||| |||| || Sbjct 40762 CAAAAAGAGTCGACACTGCA-CTTGGTT 40788 Score = 141 bits (156), Expect = 2e-28 Identities = 151/198 (76%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || |||||||| || || || ||||| || ||||| ||| || || ||||||| Sbjct 40361 TCGTCAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 40420 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||| || || || || || || ||||||||||||||||| || | Sbjct 40421 ACAATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGA 40480 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | |||||||| ||||| |||||||| || | || || |||| || ||| ||||||| | Sbjct 40481 TTTTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 40540 Query 178111 AATCAACACTGCATCTTG 178128 |||| || || || |||| Sbjct 40541 AATCTACTCTTCA-CTTG 40557 Score = 113 bits (124), Expect = 1e-19 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| |||||||| || | ||||||||||| |||||||| Sbjct 40090 ACCGGCAAGACCATCACTCTCGAGGTTGAGTCCAGCGACACCATCGACAACGTCAAGAGC 40149 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| ||||| || || ||||| || |||||||| || || | |||||||| || || Sbjct 40150 AAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAG 40209 Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 ||||| ||||| || | || |||| ||| || ||| ||||||| || || || || || Sbjct 40210 CAGCTTGAAGACGGTCGTAC-CTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCA 40268 Query 178124 TCTTGT 178129 ||| || Sbjct 40269 TCTCGT 40274 >seq542 Length=29042 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || ||||| || |||||||| |||||||| || || ||||| Sbjct 10070 TTCGTCAAGACCCTTACGGGAAAGACTATCACCCTTGAGGTGGAGTCTTCCGATACCATT 10129 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || ||||| || ||||| || ||||| | Sbjct 10130 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAACAACGTTTG 10189 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||||||||| || || || |||||| | || ||| | || || ||| ||||||| Sbjct 10190 ATCTTCGCCGGAAAGCAACTTGAGGATGGACGAACCCTTTCAGACTACAACATCCAAAA 10248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203671436626750