Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 159 8e-34
seq3721 147 5e-30
seq542 129 1e-24
>seq3755
Length=35748
Score = 159 bits (176), Expect = 8e-34
Identities = 159/205 (78%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || ||||| |||||||||||||| ||| ||| ||
Sbjct 18512 CAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCTGAT 18453
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || ||||| || || || || |||
Sbjct 18452 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAA 18393
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| || || |||||||||||| | || ||| |||| || ||| ||
Sbjct 18392 CGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAACATC 18333
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||| || || || || || ||||
Sbjct 18332 CAAAAGGAGTCCACTCTTCA-CTTG 18309
>seq3721
Length=43933
Score = 147 bits (162), Expect = 5e-30
Identities = 158/208 (76%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || || || ||||| || ||||| | ||||| || ||||||
Sbjct 40582 CAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCAGAC 40641
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || || || || || || || || ||||| ||||||||||||
Sbjct 40642 ACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAGCAA 40701
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||| || || || |||||||| ||||| | ||||| |||| || ||| |
Sbjct 40702 CGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAACATT 40761
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|||||||| || |||||||| |||| ||
Sbjct 40762 CAAAAAGAGTCGACACTGCA-CTTGGTT 40788
Score = 141 bits (156), Expect = 2e-28
Identities = 151/198 (76%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || |||||||| || || || ||||| || ||||| ||| || || |||||||
Sbjct 40361 TCGTCAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 40420
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| ||||| || || || || || || ||||||||||||||||| || |
Sbjct 40421 ACAATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGA 40480
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| |||||||| ||||| |||||||| || | || || |||| || ||| ||||||| |
Sbjct 40481 TTTTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 40540
Query 178111 AATCAACACTGCATCTTG 178128
|||| || || || ||||
Sbjct 40541 AATCTACTCTTCA-CTTG 40557
Score = 113 bits (124), Expect = 1e-19
Identities = 138/186 (74%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || ||||| |||||||| || | ||||||||||| ||||||||
Sbjct 40090 ACCGGCAAGACCATCACTCTCGAGGTTGAGTCCAGCGACACCATCGACAACGTCAAGAGC 40149
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| ||||| || || ||||| || |||||||| || || | |||||||| || ||
Sbjct 40150 AAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAG 40209
Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123
||||| ||||| || | || |||| ||| || ||| ||||||| || || || || ||
Sbjct 40210 CAGCTTGAAGACGGTCGTAC-CTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCA 40268
Query 178124 TCTTGT 178129
||| ||
Sbjct 40269 TCTCGT 40274
>seq542
Length=29042
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || || || ||||| || |||||||| |||||||| || || |||||
Sbjct 10070 TTCGTCAAGACCCTTACGGGAAAGACTATCACCCTTGAGGTGGAGTCTTCCGATACCATT 10129
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| ||||| |||||||| || ||||| || ||||| || ||||| |
Sbjct 10130 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAACAACGTTTG 10189
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||||||||| || || || |||||| | || ||| | || || ||| |||||||
Sbjct 10190 ATCTTCGCCGGAAAGCAACTTGAGGATGGACGAACCCTTTCAGACTACAACATCCAAAA 10248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203671436626750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |