Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 136 4e-27
seq3721 118 1e-21
seq542 93.3 4e-14
>seq3755
Length=35748
Score = 136 bits (150), Expect = 4e-27
Identities = 171/233 (73%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || |||||||| | |||| || || ||| |||||| || ||||| ||||||
Sbjct 18286 CCTCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCG 18345
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| |||||||| | || ||||| |||||||||||||| |||| || ||||| || | |
Sbjct 18346 GAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGG 18405
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810
|||| | |||||||||| ||| || ||| || | || | || || || |
Sbjct 18406 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTATCAGAGGATT 18463
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| ||||| | || || ||||||||||| || ||||| ||||| |||||||||
Sbjct 18464 CAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 18516
>seq3721
Length=43933
Score = 118 bits (130), Expect = 1e-21
Identities = 166/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | ||||| ||||| || ||||||||||| |||||||| || ||
Sbjct 41033 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGAC 40974
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | || || | |||||| || ||||| |||| ||||||||||||| ||
Sbjct 40973 AGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGG 40914
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CA---GTGTCGCTCGACTC 41811
| | ||||||||| ||| ||| ||| |||| | || || || || ||
Sbjct 40913 ATACCCTCCTTGTCTTGGATCTTTGACTT----GACGTTATCAATGGTATCCGAAGATTC 40858
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| |||| ||| || || || || |||| ||||| ||||| ||||||||
Sbjct 40857 CACTTCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807
Score = 113 bits (124), Expect = 4e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || ||||| || || |||||| || ||||| ||||||
Sbjct 40292 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 40233
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || |||| || ||||||||||| ||||| |||| |||||||||||||| ||||
Sbjct 40232 AAGGTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 40173
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||| ||| ||| || ||| ||| | | | |||||||| ||||| ||
Sbjct 40172 ATTCCCTCCTTATCCTGGATCTTGCTCTT-GACGTTGTCGATGGTGTCGCTGGACTCAAC 40114
Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838
||| | || || || || || ||
Sbjct 40113 CTCGAGAGTGATGGTCTTGCCGGT 40090
Score = 102 bits (112), Expect = 8e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| ||||| || ||| || |||||||| ||||||||
Sbjct 40805 CCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGAT 40746
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||| || || || || || || || ||||||| ||
Sbjct 40745 AGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 40686
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||| || |||||| ||| || | || | ||||| |||||| |
Sbjct 40685 ATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCG--ATGGTGTCTGACGACTCAA 40628
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || || || || || || ||||| ||||| || |||||
Sbjct 40627 CCTCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || || ||||| || ||||| |||||||||
Sbjct 40577 CCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 40518
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||| || || |||||||| ||||| || || ||||||| |||
Sbjct 40517 AGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGA 40458
Query 41756 ACGCTCTCCTTGTC 41769
| || |||||| ||
Sbjct 40457 ATGCCCTCCTTATC 40444
>seq542
Length=29042
Score = 93.3 bits (102), Expect = 4e-14
Identities = 142/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
|||| || ||||| ||||| || ||||| || | || || || ||||| |||||||| |
Sbjct 10250 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGA 10191
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
||| || ||||| |||| ||||| | |||||||||| ||| || ||| | | |
Sbjct 10190 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTG 10132
Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
|| | | ||| ||||||||||| | || || || || ||||| || ||||| |||
Sbjct 10131 TCAATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACG 10072
Query 41852 AA--AATCTGCATGTTATC 41868
|| || | ||||||||
Sbjct 10071 AAGCTATTTAAATGTTATC 10053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462281607150000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |