Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3755 136 4e-27 seq3721 118 1e-21 seq542 93.3 4e-14 >seq3755 Length=35748 Score = 136 bits (150), Expect = 4e-27 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || |||||||| | |||| || || ||| |||||| || ||||| |||||| Sbjct 18286 CCTCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCG 18345 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| | || ||||| |||||||||||||| |||| || ||||| || | | Sbjct 18346 GAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGG 18405 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 |||| | |||||||||| ||| || ||| || | || | || || || | Sbjct 18406 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTATCAGAGGATT 18463 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| | || || ||||||||||| || ||||| ||||| ||||||||| Sbjct 18464 CAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 18516 >seq3721 Length=43933 Score = 118 bits (130), Expect = 1e-21 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| ||||| || ||||||||||| |||||||| || || Sbjct 41033 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGAC 40974 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || | |||||| || ||||| |||| ||||||||||||| || Sbjct 40973 AGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGG 40914 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CA---GTGTCGCTCGACTC 41811 | | ||||||||| ||| ||| ||| |||| | || || || || || Sbjct 40913 ATACCCTCCTTGTCTTGGATCTTTGACTT----GACGTTATCAATGGTATCCGAAGATTC 40858 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| |||| ||| || || || || |||| ||||| ||||| |||||||| Sbjct 40857 CACTTCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || |||||| || ||||| |||||| Sbjct 40292 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 40233 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || |||| || ||||||||||| ||||| |||| |||||||||||||| |||| Sbjct 40232 AAGGTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 40173 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| || ||| ||| | | | |||||||| ||||| || Sbjct 40172 ATTCCCTCCTTATCCTGGATCTTGCTCTT-GACGTTGTCGATGGTGTCGCTGGACTCAAC 40114 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || || || || Sbjct 40113 CTCGAGAGTGATGGTCTTGCCGGT 40090 Score = 102 bits (112), Expect = 8e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || ||| || |||||||| |||||||| Sbjct 40805 CCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGAT 40746 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || || || || || || || ||||||| || Sbjct 40745 AGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 40686 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||| || |||||| ||| || | || | ||||| |||||| | Sbjct 40685 ATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCG--ATGGTGTCTGACGACTCAA 40628 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || ||||| ||||| || ||||| Sbjct 40627 CCTCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||| || ||||| ||||||||| Sbjct 40577 CCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 40518 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||| || || |||||||| ||||| || || ||||||| ||| Sbjct 40517 AGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGA 40458 Query 41756 ACGCTCTCCTTGTC 41769 | || |||||| || Sbjct 40457 ATGCCCTCCTTATC 40444 >seq542 Length=29042 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || ||||| ||||| || ||||| || | || || || ||||| |||||||| | Sbjct 10250 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGA 10191 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| || ||||| |||| ||||| | |||||||||| ||| || ||| | | | Sbjct 10190 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTG 10132 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | | ||| ||||||||||| | || || || || ||||| || ||||| ||| Sbjct 10131 TCAATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACG 10072 Query 41852 AA--AATCTGCATGTTATC 41868 || || | |||||||| Sbjct 10071 AAGCTATTTAAATGTTATC 10053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462281607150000