Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq845 102 8e-17 >seq845 Length=273148 Score = 102 bits (112), Expect = 8e-17 Identities = 337/514 (66%), Gaps = 14/514 (3%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| |||| ||| | || ||||||||||| || || || ||| || || || ||| Sbjct 251339 TGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCC 251398 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033 || || || || || || | || | | ||| || || || | | | Sbjct 251399 ATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCGACTAGGAGA 251458 Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAATTCCTATAAGTCG 16092 | ||| || || || || || ||||| ||| |||| ||| || || || | |||| | Sbjct 251459 CGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCG-TTCATGCCAAGAAGT-G 251516 Query 16093 TACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATAT 16151 || |||||||| | || || |||| |||||| ||| |||| || ||| | |||| || Sbjct 251517 CACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGATGACAT 251576 Query 16152 C--GGT--GGCT-CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 | || | || | || || ||||||| || | ||| || | || ||||| Sbjct 251577 CTTGGACAGCCTGCTTGCTTG-GACGGTGC----TTCAAGTGGGAGAAGAGGAGGCACGC 251631 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 ||||||| ||| || ||||| || | | ||| || || ||||| ||||| | || | Sbjct 251632 GAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGACCAGC 251691 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 ||| || || ||||| | |||||| || | ||| ||||| || ||||| || || Sbjct 251692 CATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCC 251751 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386 |||||||| |||||||| | | || | || | |||| | ||| | ||||||| Sbjct 251752 CTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTCTTGAATCCA 251811 Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420 | | |||| |||||||| | || || ||| Sbjct 251812 TCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAA 251845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403935182840