Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq845 152 5e-32
seq107 132 5e-26
seq329 107 2e-18
seq34 84.2 2e-11
>seq845
Length=273148
Score = 152 bits (168), Expect = 5e-32
Identities = 205/285 (72%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||||||||| || |||||||| | || ||| | ||| ||
Sbjct 252234 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 252175
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
|| |||||| ||| ||| | | | || || | |||||| ||||||||
Sbjct 252174 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 252115
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || ||||| || |||||| || ||||||||||| || ||||||||
Sbjct 252114 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 252055
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || || | ||||||| || ||||||||||| || || || |||
Sbjct 252054 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 251995
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| |||| || || ||||||||| || |||
Sbjct 251994 GAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATAC 251950
Score = 120 bits (132), Expect = 3e-22
Identities = 268/397 (68%), Gaps = 4/397 (1%)
Strand=Plus/Minus
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
|||| ||||| || || || || || |||||| ||||||| || ||||| | |
Sbjct 251780 AGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCTTCTA 251721
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| || ||||||||||| || ||| | ||| | || || |||||| ||| ||||||||||
Sbjct 251720 TCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTTACTTTCTCCAATGAGCTCATCT 251661
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC 117215
|| | || || ||||| ||| |||||| || || | || ||| || ||| ||| |
Sbjct 251660 CCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTCCCACTTGAAGCACC 251601
Query 117216 GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275
| || ||| | | ||| || || |||| || || || | ||||| || |
Sbjct 251600 GTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGATCGAACAAGAAT 251541
Query 117276 TCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAA-ACGATGTCGCA 117333
|| | ||||| || || || |||| || || || | || ||||| |||| |||
Sbjct 251540 TCTTGACCGAGGCTCTTCCTTGTGC-ACTTCTTGGCATGAA-CGCGAACTTGATGAAGCA 251483
Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAA 117393
||||||||||||||||||||| | || || ||| || | || ||| |||||
Sbjct 251482 ATACATCGAGTTCGTCGCCGATCGTCTCCTAGTCGCTCTTGGTAACGAGAAGGTGTACAA 251423
Query 117394 CACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430
| ||||||| | ||||| ||| | |||||||
Sbjct 251422 GTCTGCCAACCCATTCGACTTCATGGAGAACATCTCC 251386
>seq107
Length=187947
Score = 132 bits (146), Expect = 5e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| |||||||| |||||||||||| |||| || ||| || |
Sbjct 35264 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 35205
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || || | ||||| ||||| ||||| | || |||
Sbjct 35204 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 35145
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||| ||||| || || || || | |||||||| ||||||||||
Sbjct 35144 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 35085
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
||||| ||||| |||| || ||
Sbjct 35084 ATCCAAAAGGAATCCACTCTTCA 35062
>seq329
Length=307717
Score = 107 bits (118), Expect = 2e-18
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| |||| ||||| ||| ||| | | | | |||| | |||
Sbjct 134555 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACG-TAAAG 134497
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| |||| || || ||||| || ||| ||||||| || || | |||| ||| |||
Sbjct 134496 AGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGC 134437
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
||||| || || || | || ||| | | |||||||||||| || |||||| | || ||
Sbjct 134436 AAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 134377
Query 40891 CATCTAGT 40898
||||| ||
Sbjct 134376 CATCTCGT 134369
Score = 102 bits (112), Expect = 8e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| |||||||| | || ||||| | |||||| | |
Sbjct 134287 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 134228
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || || | ||||| ||||| || || |||| || ||||| | |
Sbjct 134227 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 134168
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| ||| || ||||| || || || | |||||||| | ||||||||||||||| || |
Sbjct 134167 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 134108
Query 40880 AGGCCACGCTGCATCTAGTGTTGCGC 40905
| |||| || || | ||| | |||
Sbjct 134107 AATCCACCCTTCACTTGGTGCTCCGC 134082
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || || || ||||| | || || || | |
Sbjct 134069 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 134010
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | || ||| || | || || ||||| ||||| |||||||
Sbjct 134009 GATACCATCGACAACG-TGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCA 133951
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| || || || || || || || | ||||| || ||||||||
Sbjct 133950 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 133891
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
||||||||| ||| |||| ||||||
Sbjct 133890 CATCCAGAAAGAGTCCACACTGCAT 133866
>seq34
Length=307725
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/188 (70%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751
||||| ||||| || || || ||||| || ||||||||| | || ||||| || | ||
Sbjct 97332 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 97391
Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811
| | | | ||||| || || | ||||| ||||| || ||| ||||||| ||
Sbjct 97392 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 97451
Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871
||| | |||| ||| || || || || || |||| || ||||| |||||||||||
Sbjct 97452 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 97511
Query 40872 CCAGAAGG 40879
|| ||||
Sbjct 97512 TCAAAAGG 97519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515208657327120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |