Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq586 279 6e-70 seq845 91.5 2e-13 >seq586 Length=108090 Score = 279 bits (308), Expect = 6e-70 Identities = 1149/1788 (64%), Gaps = 41/1788 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 12326 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 12385 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | |||| ||| |||||||| || | ||| | || ||| || Sbjct 12386 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 12445 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || ||||| ||||| || || | ||||| || | || || ||||||| | Sbjct 12446 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 12505 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 12506 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 12565 Query 62286 TTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | | || ||||| || |||||||| | || || | ||||| || | || | Sbjct 12566 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 12625 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 |||||| | ||| | | | | || || |||||||| ||||||||||||||| Sbjct 12626 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 12685 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | ||| || | |||| ||| || ||| || || ||||| | |||| || || Sbjct 12686 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 12745 Query 62463 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 | |||||||| || || || | || |||||||| || || | ||||| || | | ||| Sbjct 12746 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 12804 Query 62522 GTATGTTCTGATTT-TATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 || | | |||| | |||| || | | |||| | |||||| || | ||| ||| Sbjct 12805 GTGTTGTTTGATGGATTTCTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGTAACTC 12863 Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATG 62640 ||||| || || || | | || ||| | || || ||||| | Sbjct 12864 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 12923 Query 62641 GTCCTTCCTTCTCAGCTAGTTTACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62698 || || || ||| | | |||| | | | || ||| ||| ||||| ||||| Sbjct 12924 TACCCAACTCCTTAGCAATCT--CAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 12981 Query 62699 AAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA- 62756 ||||| | | || || | |||| ||||| || |||||||| |||| ||||| Sbjct 12982 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 13039 Query 62757 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62816 | ||| || || || | ||||||||||| | | ||||||||| ||| | ||| | Sbjct 13040 AAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GCT 13098 Query 62817 ATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62875 |||| | | ||||| | || || || || || || || || || || | |||||||| Sbjct 13099 CTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGAC 13158 Query 62876 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACAA 62931 || |||| || || | || || | ||||| | || | ||| || | || Sbjct 13159 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCAC 13218 Query 62932 ACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATA 62989 | ||||| | |||| || |||| ||||| || || |||| | | | || Sbjct 13219 AAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTA 13278 Query 62990 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACT 63049 || | || || ||||| | ||| | || || || | || | ||| || || Sbjct 13279 TTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCT 13338 Query 63050 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 63109 ||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| || Sbjct 13339 CTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTC 13398 Query 63110 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTCTC 63165 | ||| | | ||| | | | || || || | || | || || | ||||| Sbjct 13399 GAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCTC 13458 Query 63166 TT---TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAG 63222 | || |||||| | | ||| |||||||| || | |||| |||| | || Sbjct 13459 ATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCCAG 13511 Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282 ||||||||| || ||||| | | ||| || ||| | | || || ||||| |||| Sbjct 13512 GACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGA 13571 Query 63283 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 |||| |||||||| | || ||| || ||||| | | | ||| || || || Sbjct 13572 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGG 13630 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||| || || |||||| | | || ||| | ||||| || || | || | || Sbjct 13631 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 13690 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | ||||| || |||||||| || || || | ||||||||| |||||||| ||||| Sbjct 13691 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 13750 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | | ||| || | || ||||| || |||| |||||||||| ||| || | ||| || Sbjct 13751 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 13810 Query 63522 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 ||||| || | ||| ||||| || || || || |||||||||| | || ||| Sbjct 13811 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 13870 Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 || | || ||||| || || || || ||||| || |||| | || || || || Sbjct 13871 GTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCAT 13930 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || | || | | || || || || | ||||| || ||||| || || Sbjct 13931 GATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 13990 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAAT 63760 |||| | || | || ||||| |||||||| || || ||||| || | ||||| Sbjct 13991 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAAT 14049 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 || || || |||||||| | ||| ||||| || | ||| ||| ||| Sbjct 14050 ACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCAACTTT 14097 >seq845 Length=273148 Score = 91.5 bits (100), Expect = 2e-13 Identities = 223/334 (67%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 33804 GTTTCTATGGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGAT 33862 || || || ||||| |||||||| ||| || | | || |||| || |||||||| Sbjct 251903 GTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGAT 251961 Query 33863 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33922 | ||| || |||| || || ||||| || || || || || |||||||| || Sbjct 251962 GAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAGCA 252021 Query 33923 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33982 | |||||||| || || ||||| || || || || | | || || || ||||| Sbjct 252022 ACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTAT 252081 Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TG 34038 ||| || ||||| || || || | || || || ||||| || || | Sbjct 252082 TCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATT 252141 Query 34039 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 34098 | ||| ||| ||||||||| | | || || || | || | ||||| ||||||| | Sbjct 252142 GAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGA 252200 Query 34099 ATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 | |||||||| |||||||| ||||| | |||||| Sbjct 252201 AAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 252234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804712357360