Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq586 269 4e-67
>seq586
Length=108090
Score = 269 bits (298), Expect = 4e-67
Identities = 1149/1779 (65%), Gaps = 41/1779 (2%)
Strand=Plus/Plus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 12326 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 12385
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| | |||| ||| ||||||||| || | ||| | || ||| ||
Sbjct 12386 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 12445
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 12446 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 12505
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 12506 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 12565
Query 78958 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014
|| | | || ||||| || |||||||| || || || | ||||| || | || |
Sbjct 12566 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 12625
Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 12626 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 12685
Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134
| ||| || | |||| ||| || ||| || |||||||| | | || || ||
Sbjct 12686 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 12745
Query 79135 AAAATTTGAGCAGTTGATGCC-GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193
| |||||||| || || || | ||||||||||| || || | ||||| || | | |||
Sbjct 12746 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 12804
Query 79194 GTATGATCTGATTTTATCTTTTAGAGAT-TCCCAATCCCAAAGATCAGACGGGACAACAT 79252
|| | | |||| || | || || | ||||| |||||||| || | || |||
Sbjct 12805 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 12863
Query 79253 TCCAAAGATCATATTGTAGAATACCGTTACTAG-CGTATGATCCTGTGTATGTTTCATAA 79311
||| | ||| ||||| || || || | || | ||| ||| ||| || |||||
Sbjct 12864 CCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAGGTCTCATAG 12922
Query 79312 GGTCCTTCCTTTTCGGCTAATTCACAACTCGCC-TCT-AATGCTCCGTAATAAATGGTTT 79369
| || || | || | || |||| | | | || || ||| ||||| ||||
Sbjct 12923 GTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTT 12980
Query 79370 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTAT-CAAATGGATAATTTAAGAG 79427
|||| || | | ||||| | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 12981 CGAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAG 13037
Query 79428 A-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 79486
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 13038 CCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 13096
Query 79487 AAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545
|||| | | ||||| | || || || || || || || || || || | || |||
Sbjct 13097 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 13156
Query 79546 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTA----C 79601
|| | |||| || || | || || | ||||| | ||| || | | |
Sbjct 13157 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 13216
Query 79602 AAACATGTTC--AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659
| | ||||| | || | || |||| ||||| || || |||| | | |
Sbjct 13217 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 13276
Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719
|||| | ||||| ||||| | || | |||||| || | || | ||| ||
Sbjct 13277 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTG 13336
Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779
||||| ||||| || |||||||| ||||| ||||| ||| | || || ||| | ||||
Sbjct 13337 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCC 13396
Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT-ATCTCTTTTCTCT 79838
|| | ||| | | ||| | | | || || || | |||| | |||| ||
Sbjct 13397 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTACCTTCC 13453
Query 79839 TTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896
||| || | | ||| | ||| |||||||| || | ||||| | || ||||||
Sbjct 13454 TTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGA 13513
Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGA 79954
||||| | || ||||| | | ||| || | | || ||| || || ||||| ||||
Sbjct 13514 CATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCATGAAGA 13571
Query 79955 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013
|||| |||||||| | || ||| || ||||| | || | || || || ||
Sbjct 13572 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGG 13630
Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073
|||||| || || |||||| | | || ||| | ||||| || || | || | ||
Sbjct 13631 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 13690
Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133
| | || || || |||||||| || || || | ||||||||| |||||||| |||||
Sbjct 13691 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 13750
Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193
| | ||| || | || || ||||| |||| ||||| |||| ||| || ||| ||
Sbjct 13751 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 13810
Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253
||||| || | ||| ||||| || || || || |||||||||| | || |||
Sbjct 13811 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 13870
Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313
|| | |||||||| || || || || ||||| || |||| | || || || ||
Sbjct 13871 GTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCAT 13930
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
|| | || | || || || || | ||||| || ||||| || ||
Sbjct 13931 GATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 13990
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432
|||| | |||| || ||||| |||||||| || || ||||| || | |||||
Sbjct 13991 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAAT 14049
Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471
|| || || |||||||| | ||| ||||| || | |||
Sbjct 14050 ACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 14088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718254102424680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |