Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1007 118 2e-22 seq428 109 9e-20 >seq1007 Length=7925 Score = 118 bits (130), Expect = 2e-22 Identities = 87/99 (88%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||||||| ||| |||||| |||||||||||||| ||||| ||||| ||||| Sbjct 1772 GCTAAGCGTCATCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACAAAGCCTGCTAT 1714 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| ||||||||||| || ||||||||| |||| Sbjct 1713 CAGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTC 1675 >seq428 Length=295927 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | |||| ||||||||||| ||||||||||||||||| Sbjct 274941 GCCAAGCGTCACCGCAAGATTT-TGAGAGACAACATCCAAGGTATCACCAAGCCAGCTAT 274883 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| |||||||||||||| ||||||||| |||| Sbjct 274882 CAGACGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTC 274844 Score = 105 bits (116), Expect = 1e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| ||||||| |||||| || || |||| ||| | Sbjct 274730 TGATCTACGAAGAGACCCGTGGTGTATTGAAGACCTTCCTTGAGGGTGTCATCCGTGACG 274671 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || ||||| || || ||||| |||||||||||| | || ||||||| | Sbjct 274670 CCGTCACCTACACTGAGCATGCCAAGCGTAAAACTGTCACCTCCCTCGACGTCGTCTACG 274611 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | || || |||||||||| |||| ||||| || |||| Sbjct 274610 CCCTCAAGCGCCAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 274568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073703279441